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The map label for this gene is yulB [H]

Identifier: 23097953

GI number: 23097953

Start: 529625

End: 530398

Strand: Direct

Name: yulB [H]

Synonym: OB0498

Alternate gene names: 23097953

Gene position: 529625-530398 (Clockwise)

Preceding gene: 23097952

Following gene: 23097954

Centisome position: 14.59

GC content: 35.14

Gene sequence:

>774_bases
ATGCTTGTAGCAGAAAGACATCACAAAATAGTTGAATTAGTGAATGAAAAGAAGAGCATTCGAGTTTCTGATATGAGTAA
GTTATTTGCAGTTACAGAAGAAACGATTCGAAGAGATTTAGAAAAGTTAGAGAAAGAGAATAAGTTAGCTCGTAGTCATG
GTGGCGCAGTTAGCTTGCATCCGAATGATTCTTTAGAGATTCCTTATACGCAACGAGAAATTATGAATGTACGTGAGAAA
CAAAAAATTGCAATGGAAGCTATTAAACATGTTTTTGAAGGAGATAAAATCATTTTAGATGCCAGTACAACTGCCTGGTA
TATGGCAAAAGCATTACCTGACTTACCTTTAACCGTCATGACCAACTCCATTAAAGTTGCAATGGAACTGAGTAACAAAC
ACCAAATTAACGTGATTTCAACTGGTGGAACGCTTCTGTCTAAGTCACTCTCTTACGCTGGACCTTTAGCAGAGGCTTCG
TTCCATAGTTATCATCTTGATAAGGCATTTATTTCTTGTAAAGGTCTGCATCTAGAAAGAGGAATAAGTGAGTCGGATGA
ACAACAATCACGTATTAAAAAGAAAATGATTGAAAGTGCTGATTCTACTTATTTAATGATAGATTATAGTAAATTTGGCA
AAACTGCTTTTTCGAAAATTGATCAAATTGAAGTCGCGCATCATTTGGTTACAGATAGCAAAGCAGACCAAACGATGATT
CAGTTGTTAAAAGAAAAAGGAATTCGTGTAACGGAAGTACAAAATGATGAATAA

Upstream 100 bases:

>100_bases
TCTATGCTTGTTAAACTTAGTAGAAAATGGGTAAAATATAGTAAAAATATGATATGCTATTTTAGAGAATATGTTAAAGG
TAAGAGAAGGAAGTGGTTAG

Downstream 100 bases:

>100_bases
TTAACAAGATATCAAAGAGGTAGGGACATAACAAACAGTTCTGGTCAAAAGACGGATGATAGGTAAAATAAGCGTAAGAA
ATATACGGAGACTCCTGTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLVAERHHKIVELVNEKKSIRVSDMSKLFAVTEETIRRDLEKLEKENKLARSHGGAVSLHPNDSLEIPYTQREIMNVREK
QKIAMEAIKHVFEGDKIILDASTTAWYMAKALPDLPLTVMTNSIKVAMELSNKHQINVISTGGTLLSKSLSYAGPLAEAS
FHSYHLDKAFISCKGLHLERGISESDEQQSRIKKKMIESADSTYLMIDYSKFGKTAFSKIDQIEVAHHLVTDSKADQTMI
QLLKEKGIRVTEVQNDE

Sequences:

>Translated_257_residues
MLVAERHHKIVELVNEKKSIRVSDMSKLFAVTEETIRRDLEKLEKENKLARSHGGAVSLHPNDSLEIPYTQREIMNVREK
QKIAMEAIKHVFEGDKIILDASTTAWYMAKALPDLPLTVMTNSIKVAMELSNKHQINVISTGGTLLSKSLSYAGPLAEAS
FHSYHLDKAFISCKGLHLERGISESDEQQSRIKKKMIESADSTYLMIDYSKFGKTAFSKIDQIEVAHHLVTDSKADQTMI
QLLKEKGIRVTEVQNDE
>Mature_257_residues
MLVAERHHKIVELVNEKKSIRVSDMSKLFAVTEETIRRDLEKLEKENKLARSHGGAVSLHPNDSLEIPYTQREIMNVREK
QKIAMEAIKHVFEGDKIILDASTTAWYMAKALPDLPLTVMTNSIKVAMELSNKHQINVISTGGTLLSKSLSYAGPLAEAS
FHSYHLDKAFISCKGLHLERGISESDEQQSRIKKKMIESADSTYLMIDYSKFGKTAFSKIDQIEVAHHLVTDSKADQTMI
QLLKEKGIRVTEVQNDE

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=251, Percent_Identity=35.4581673306773, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=33.1896551724138, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=30.2788844621514, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789059, Length=248, Percent_Identity=33.4677419354839, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=29.2, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI87082344, Length=252, Percent_Identity=26.1904761904762, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787540, Length=231, Percent_Identity=30.7359307359307, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI226510968, Length=231, Percent_Identity=31.1688311688312, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=26.4591439688716, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790753, Length=225, Percent_Identity=26.6666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787063, Length=249, Percent_Identity=22.4899598393574, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29023; Mature: 29023

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVAERHHKIVELVNEKKSIRVSDMSKLFAVTEETIRRDLEKLEKENKLARSHGGAVSLH
CCCCHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PNDSLEIPYTQREIMNVREKQKIAMEAIKHVFEGDKIILDASTTAWYMAKALPDLPLTVM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCEEE
TNSIKVAMELSNKHQINVISTGGTLLSKSLSYAGPLAEASFHSYHLDKAFISCKGLHLER
ECCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHC
GISESDEQQSRIKKKMIESADSTYLMIDYSKFGKTAFSKIDQIEVAHHLVTDSKADQTMI
CCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH
QLLKEKGIRVTEVQNDE
HHHHHCCCEEEECCCCC
>Mature Secondary Structure
MLVAERHHKIVELVNEKKSIRVSDMSKLFAVTEETIRRDLEKLEKENKLARSHGGAVSLH
CCCCHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PNDSLEIPYTQREIMNVREKQKIAMEAIKHVFEGDKIILDASTTAWYMAKALPDLPLTVM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCEEE
TNSIKVAMELSNKHQINVISTGGTLLSKSLSYAGPLAEASFHSYHLDKAFISCKGLHLER
ECCEEEEEEECCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHC
GISESDEQQSRIKKKMIESADSTYLMIDYSKFGKTAFSKIDQIEVAHHLVTDSKADQTMI
CCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH
QLLKEKGIRVTEVQNDE
HHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]