Click here to switch to the map view.

The map label for this gene is yfkA [H]

Identifier: 23097891

GI number: 23097891

Start: 463303

End: 464433

Strand: Direct

Name: yfkA [H]

Synonym: OB0436

Alternate gene names: 23097891

Gene position: 463303-464433 (Clockwise)

Preceding gene: 23097889

Following gene: 28563907

Centisome position: 12.76

GC content: 38.82

Gene sequence:

>1131_bases
ATGAGTGTAAAAACAACGAATCAACCAATGTCACCAACCAATGATCCATGGGAAGCTTACATGGATGTAGAGCAACACGG
AAAAATGACATTATCGAATATTGAATTTACAACAACATATATGTGTAATATGCGTTGCGCGCATTGTGCAGTAGGATATA
CACTACAACAAATGGATCCAGATGCACTGCCAATGGAACTGATAGAAAAGCGGCTAGATGAGATTCCGCATTTGCGAACA
TTGAGTATTACAGGCGGGGAACCGATGATGAATAAAAAGTCAGTTCGTCAATATGTCTTACCTTTATTGAAATATGCCCA
TGAGCGCGGCATTAAGACACAGATGAATTCCAACTTAACCTTGCCATACAATCGATATGAAGAGATTGTTCCATACTTAG
ATGTTTTACATATTTCACATAACTGGGGAACGGTTGAAGAATTTGCAGAGACAGGGTTTGCTTTAATGGATCGAAAACCT
TCCGAAGAGAATCGTGCCAAGTACTTTGACCGTATGGTAGAAAATGCACAACGTTTATCCAAAGAAGGTGTCATGGTTTC
AGCTGAAACGATGTTGAACAAACGGACGTTTCCACATCTAGAGAGCATCCATGACCATGTATTGGAAATGGGTTGCGCTC
GCCATGAAATTCATCCAATGTACCCTGTGGATTTTGCTGAAAATCTAGAAATTCTATCGCTAGATGAAATGCGAGAAGGA
ATTACCCGTTTGTTGAATCACCGAAACCAAGACCTATGGATGTTATTTGGGACTTTGCCATTCTATGCTTGCAGCAGAAA
TGATGAAGATATTGAATTGCTAAAGCGACTATACAAAGAACCAAATGTTTCCGTTCGTAATGATCCAGATGGTCGTTCAC
GATTAAATGTAAATATTTTTACAGGTGATGTAATCGTTACGGACTTTGGTGATGAACCGAAGCTAGGAAATATAAAAACA
GATTCTTTACCTAGTGCATACAATCGTTGGATGGAGACAAATACAGCTAAAAGTTTAAATTGTCATTGTCCGGCAGTATC
TTGTTTGGGGCCTAATGTACTTGTGAAAAATGCATACTATAAAGATGTTGATTTCCAACAGCGAAAGGCAAGAATTAGCC
AAACATCATAA

Upstream 100 bases:

>100_bases
TTTTCTCTCTAAACCTCATCTATTTATAAAATAGGGTAAGCAAGCAGTGATATGCATGTTAAAATAAATAAGGTAAATAG
AAAGGAAGTTATGTTATAAA

Downstream 100 bases:

>100_bases
TAATACTACATCAAAGAGGAACCACCTAGAAAAACAACTAGAAAGTAAATAACTATATTACTAAAGTAAGGTGGTTCAAT
CTAATGGAAATATGGGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSVKTTNQPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDPDALPMELIEKRLDEIPHLRT
LSITGGEPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLTLPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKP
SEENRAKYFDRMVENAQRLSKEGVMVSAETMLNKRTFPHLESIHDHVLEMGCARHEIHPMYPVDFAENLEILSLDEMREG
ITRLLNHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIFTGDVIVTDFGDEPKLGNIKT
DSLPSAYNRWMETNTAKSLNCHCPAVSCLGPNVLVKNAYYKDVDFQQRKARISQTS

Sequences:

>Translated_376_residues
MSVKTTNQPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDPDALPMELIEKRLDEIPHLRT
LSITGGEPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLTLPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKP
SEENRAKYFDRMVENAQRLSKEGVMVSAETMLNKRTFPHLESIHDHVLEMGCARHEIHPMYPVDFAENLEILSLDEMREG
ITRLLNHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIFTGDVIVTDFGDEPKLGNIKT
DSLPSAYNRWMETNTAKSLNCHCPAVSCLGPNVLVKNAYYKDVDFQQRKARISQTS
>Mature_375_residues
SVKTTNQPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDPDALPMELIEKRLDEIPHLRTL
SITGGEPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLTLPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKPS
EENRAKYFDRMVENAQRLSKEGVMVSAETMLNKRTFPHLESIHDHVLEMGCARHEIHPMYPVDFAENLEILSLDEMREGI
TRLLNHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIFTGDVIVTDFGDEPKLGNIKTD
SLPSAYNRWMETNTAKSLNCHCPAVSCLGPNVLVKNAYYKDVDFQQRKARISQTS

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR014866 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08756 YfkB [H]

EC number: NA

Molecular weight: Translated: 43423; Mature: 43292

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKTTNQPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDP
CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECEEEEEEEEECCHHHHHHHCCCHHHCCC
DALPMELIEKRLDEIPHLRTLSITGGEPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLT
CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCC
LPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKPSEENRAKYFDRMVENAQRLS
CCHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
KEGVMVSAETMLNKRTFPHLESIHDHVLEMGCARHEIHPMYPVDFAENLEILSLDEMREG
HCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEHHHHHHH
ITRLLNHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIF
HHHHHHCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
TGDVIVTDFGDEPKLGNIKTDSLPSAYNRWMETNTAKSLNCHCPAVSCLGPNVLVKNAYY
ECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCEEEECCCC
KDVDFQQRKARISQTS
CCCCHHHHHHHCCCCC
>Mature Secondary Structure 
SVKTTNQPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDP
CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECEEEEEEEEECCHHHHHHHCCCHHHCCC
DALPMELIEKRLDEIPHLRTLSITGGEPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLT
CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCC
LPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKPSEENRAKYFDRMVENAQRLS
CCHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
KEGVMVSAETMLNKRTFPHLESIHDHVLEMGCARHEIHPMYPVDFAENLEILSLDEMREG
HCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEHHHHHHH
ITRLLNHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIF
HHHHHHCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
TGDVIVTDFGDEPKLGNIKTDSLPSAYNRWMETNTAKSLNCHCPAVSCLGPNVLVKNAYY
ECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCEEEECCCC
KDVDFQQRKARISQTS
CCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]