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The map label for this gene is yghB [H]

Identifier: 22127371

GI number: 22127371

Start: 3879716

End: 3880378

Strand: Direct

Name: yghB [H]

Synonym: y3497

Alternate gene names: 22127371

Gene position: 3879716-3880378 (Clockwise)

Preceding gene: 22127370

Following gene: 22127373

Centisome position: 84.33

GC content: 48.72

Gene sequence:

>663_bases
ATGGATGTATTACGTGAAATCCTTCATGCCCTCTGGCAACAGGATTTTAGTAAACTGGCTGACCCAAATGTTATTTGGGT
GATTTACGGTATCCTTTTTACCACCCTATTTTTAGAAAACGGTTTACTTCCCGCCTCTTTTCTCCCCGGAGATAGCTTGT
TGCTATTGGCCGGTGCGTTGATAGCCAAAGGGGTTATGGGTTTCTTGCCCACGCTGATCATTCTGACTACCGCCGCCAGT
TTAGGCTGTTGGTTAAGTTATCTACAAGGCCGCTGGTTGGGTGATACGTCGGTGGTGAAACGGTGGTTGTTACAGCTCCC
TCTTCAGTACCGTCAGCGCGCCCATACCCTGTTTGTTCGCCACGGTTTAGCCGCCTTATTGGTGGGCCGTTTTCTGGCTT
TTGTCCGGACGTTACTGCCAACACTGGCGGGTATTTCTGGCCTGAACAGCATACGTTTTCAGTTATTTAATTGGCTAAGC
GGCCTGCTGTGGGTTGGCAGCGTCGTGGGTTTGGGTTTTGCCCTCAGCCATATTCCGTTGGTTAAACAGTATGAAAATCA
GGTGATGACGGCACTGATGATTTTACCCATTGTTCTGTTATTGGCCGGTTTAGTCGGCACACTGATTTTGGTATGGTGCA
AACGTAAGAGCACGACCGAATAG

Upstream 100 bases:

>100_bases
ATTGAGTTATTGGGGATAAGATCAACGTGATTTTACCTCATTAAAGATATACTGATACCCACCAACGATATCCTCACACG
TTAGGCAAACAGGAAAAGAA

Downstream 100 bases:

>100_bases
CGTAAATAGGCACCATCCAGGTGAATAAAACGGCATCTAATACGCCGTTTCTATGAAGCCTTGGTTACAGCTATCGCCCC
TCGGCCAAGGGTCAATTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDVLREILHALWQQDFSKLADPNVIWVIYGILFTTLFLENGLLPASFLPGDSLLLLAGALIAKGVMGFLPTLIILTTAAS
LGCWLSYLQGRWLGDTSVVKRWLLQLPLQYRQRAHTLFVRHGLAALLVGRFLAFVRTLLPTLAGISGLNSIRFQLFNWLS
GLLWVGSVVGLGFALSHIPLVKQYENQVMTALMILPIVLLLAGLVGTLILVWCKRKSTTE

Sequences:

>Translated_220_residues
MDVLREILHALWQQDFSKLADPNVIWVIYGILFTTLFLENGLLPASFLPGDSLLLLAGALIAKGVMGFLPTLIILTTAAS
LGCWLSYLQGRWLGDTSVVKRWLLQLPLQYRQRAHTLFVRHGLAALLVGRFLAFVRTLLPTLAGISGLNSIRFQLFNWLS
GLLWVGSVVGLGFALSHIPLVKQYENQVMTALMILPIVLLLAGLVGTLILVWCKRKSTTE
>Mature_220_residues
MDVLREILHALWQQDFSKLADPNVIWVIYGILFTTLFLENGLLPASFLPGDSLLLLAGALIAKGVMGFLPTLIILTTAAS
LGCWLSYLQGRWLGDTSVVKRWLLQLPLQYRQRAHTLFVRHGLAALLVGRFLAFVRTLLPTLAGISGLNSIRFQLFNWLS
GLLWVGSVVGLGFALSHIPLVKQYENQVMTALMILPIVLLLAGLVGTLILVWCKRKSTTE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789384, Length=197, Percent_Identity=71.5736040609137, Blast_Score=288, Evalue=2e-79,
Organism=Escherichia coli, GI1789481, Length=215, Percent_Identity=60.9302325581395, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1788656, Length=175, Percent_Identity=30.2857142857143, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24378; Mature: 24378

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLREILHALWQQDFSKLADPNVIWVIYGILFTTLFLENGLLPASFLPGDSLLLLAGAL
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGVMGFLPTLIILTTAASLGCWLSYLQGRWLGDTSVVKRWLLQLPLQYRQRAHTLFVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLAALLVGRFLAFVRTLLPTLAGISGLNSIRFQLFNWLSGLLWVGSVVGLGFALSHIPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKQYENQVMTALMILPIVLLLAGLVGTLILVWCKRKSTTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDVLREILHALWQQDFSKLADPNVIWVIYGILFTTLFLENGLLPASFLPGDSLLLLAGAL
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGVMGFLPTLIILTTAASLGCWLSYLQGRWLGDTSVVKRWLLQLPLQYRQRAHTLFVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLAALLVGRFLAFVRTLLPTLAGISGLNSIRFQLFNWLSGLLWVGSVVGLGFALSHIPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKQYENQVMTALMILPIVLLLAGLVGTLILVWCKRKSTTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]