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The map label for this gene is radC [C]

Identifier: 21910313

GI number: 21910313

Start: 831872

End: 832501

Strand: Direct

Name: radC [C]

Synonym: SpyM3_0777

Alternate gene names: 21910313

Gene position: 831872-832501 (Clockwise)

Preceding gene: 21910312

Following gene: 21910320

Centisome position: 43.77

GC content: 32.22

Gene sequence:

>630_bases
ATGCGACTAGGAGCAGAGTCTCTAAGTAATCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGT
CTTAGAGCTGTCATCCTATCTTTTATCGCATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAAC
ATTTGGCAGGTATAGGAAAAGTTAAAGCGATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGAT
AAGACATTAACTGATAGCGTATTAACCAGTGTTCAGGTCGCTGAAAAAATAATGGCAGCTTTAGGAGATAAAAAACAAGA
GCATTTAGTCGTATTGTATTTAGATAATCAAAATCGTATTTTTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTT
CACTTGCAGAACCAAGAGAAATTTTATACTATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCT
TCAGGAAATATTGAACCTAGTTCTAACGATTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTAT
CTGTCTAGATCACATTATCGTTAGCTATAAAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Upstream 100 bases:

>100_bases
AAAGGAACTTGTTTTTTTGTCGAATAAAAAGATGGAGGTAATATGATAAATGTATTCTATAAAATGTGATGATAATAAAG
TCATGCCAAGAGAACGTTTG

Downstream 100 bases:

>100_bases
GTCAGAAGTCATTGACGAATAAGCGGAACAATTGTAGATCTTCATCTCGAACACCTTGGAGAAGTTCAGGATGCCACTGA
ACACCTAAAAAAGGAATGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATD
KTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRIFEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHP
SGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Sequences:

>Translated_209_residues
MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATD
KTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRIFEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHP
SGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF
>Mature_209_residues
MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATD
KTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRIFEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHP
SGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=208, Percent_Identity=33.1730769230769, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI2367100, Length=111, Percent_Identity=39.6396396396396, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=34.0425531914894, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788997, Length=126, Percent_Identity=31.7460317460317, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 23707; Mature: 23707

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGK
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRI
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
FEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
CEDLGIICLDHIIVSYKDYYSFREKSTLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGK
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKIMAALGDKKQEHLVVLYLDNQNRI
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
FEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRS
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
CEDLGIICLDHIIVSYKDYYSFREKSTLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11917108 [H]