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The map label for this gene is ycfH [C]

Identifier: 21672619

GI number: 21672619

Start: 388745

End: 389539

Strand: Direct

Name: ycfH [C]

Synonym: BUsg343

Alternate gene names: 21672619

Gene position: 388745-389539 (Clockwise)

Preceding gene: 21672618

Following gene: 21672620

Centisome position: 60.6

GC content: 23.52

Gene sequence:

>795_bases
ATGTTCTTAATTGATTCTCACTGCCATATTGATCAGATGAACATTGATCAAAAAAATGATGATTTATTACATCAAGAAAT
AGAAAAAATACTCAATAAAGCATATGAAAATCATGTAAAAAAATTTTTGACAGTATCAACTTCCATCCAAAATTTTTATA
AAACAAAAAAATTGTTAAGTACATATGATTCTATATTTTATTCTTGTGGTATTCATCCATTATACTGTCAAAAAGAAATA
GAATGTCTTAATGAATTAAAAAAATTATCTTATGATAAATGTGTTATAGCATTAGGAGAAACGGGTCTAGATTATTATTA
CTCATTTGAAACAAAAAATCTGCAAGAAAAATTTTTCAGAGAACATATTAGAATTGCAATAACACTAAATAAACCAATCA
TAATACACAGTCGGAATGCTATAAAAGATACAATAAAAATTCTAAAAGAAGAAAATGCAGAAAAATGTGGTGGAATTTTA
CATTCATTTACTGAAAGTGAAAAATCAGCATTTGAACTATTAGATATGGGATTTTATATTTCTTTTTCTGGAATAATTAC
TTTTAAAAAATCAATTGAATTATGTAATACATTAAAAAAAATACCACTAGAAAAATTATTGATAGAAACAGATTCTCCTT
ATTTAGCACCTATACCATATAGAGGGAAAAAAAATCAACCGGCATATTTACTGGATATAGCAAAAAAAATAGCCCTTATA
AAAGAAATAAGTTTAAAAGAATTAGCAAAAATCACTACAAATAATTTTTTTACGCTATTTAACTTAAATTTTTAA

Upstream 100 bases:

>100_bases
GTGAATTACTACTCTTAGAACAATTACTTTTATGGGAAAAAATTTTATGTTTTATAACACCTTAAGTTCTACATAATTTT
TAAATTAAAGAGAGAAAATT

Downstream 100 bases:

>100_bases
TAAAAATATATTATTTAATTTATTTGACATTTTAGATATACCTAGGAGTTTTTAAATATGTTTAAAAATGTATTTTCAAG
CCTTCAAAAGGTTGGTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLSTYDSIFYSCGIHPLYCQKEI
ECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKFFREHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGIL
HSFTESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKKIPLEKLLIETDSPYLAPIPYRGKKNQPAYLLDIAKKIALI
KEISLKELAKITTNNFFTLFNLNF

Sequences:

>Translated_264_residues
MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLSTYDSIFYSCGIHPLYCQKEI
ECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKFFREHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGIL
HSFTESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKKIPLEKLLIETDSPYLAPIPYRGKKNQPAYLLDIAKKIALI
KEISLKELAKITTNNFFTLFNLNF
>Mature_264_residues
MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLSTYDSIFYSCGIHPLYCQKEI
ECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKFFREHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGIL
HSFTESEKSAFELLDMGFYISFSGIITFKKSIELCNTLKKIPLEKLLIETDSPYLAPIPYRGKKNQPAYLLDIAKKIALI
KEISLKELAKITTNNFFTLFNLNF

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family

Homologues:

Organism=Homo sapiens, GI110349730, Length=272, Percent_Identity=31.25, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI110349734, Length=272, Percent_Identity=31.25, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=31.0469314079422, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=29.2592592592593, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI226061614, Length=263, Percent_Identity=30.4182509505703, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI226061595, Length=234, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=28.4, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI225903424, Length=277, Percent_Identity=28.158844765343, Blast_Score=88, Evalue=8e-18,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=46.3878326996198, Blast_Score=277, Evalue=5e-76,
Organism=Escherichia coli, GI48994985, Length=243, Percent_Identity=31.6872427983539, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=26.7175572519084, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=267, Percent_Identity=28.0898876404494, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=269, Percent_Identity=28.6245353159851, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565396, Length=299, Percent_Identity=26.7558528428094, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=293, Percent_Identity=26.2798634812287, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=271, Percent_Identity=29.1512915129151, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI221330018, Length=281, Percent_Identity=25.9786476868327, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24586117, Length=281, Percent_Identity=25.9786476868327, Blast_Score=88, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y343_BUCAP (Q8K9J1)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660686.1
- ProteinModelPortal:   Q8K9J1
- SMR:   Q8K9J1
- EnsemblBacteria:   EBBUCT00000000174
- GeneID:   1005581
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg343
- GeneTree:   EBGT00050000008029
- HOGENOM:   HBG629833
- OMA:   TREVCEY
- ProtClustDB:   CLSK315938
- BioCyc:   BAPH198804:BUSG343-MONOMER
- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991
- PANTHER:   PTHR10060
- PIRSF:   PIRSF005902
- TIGRFAMs:   TIGR00010

Pfam domain/function: PF01026 TatD_DNase

EC number: 3.1.21.-

Molecular weight: Translated: 30703; Mature: 30703

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS01137 TATD_1; PS01090 TATD_2; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLS
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYDSIFYSCGIHPLYCQKEIECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKFFR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHH
EHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGILHSFTESEKSAFELLDMGFYI
HHEEEEEEECCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SFSGIITFKKSIELCNTLKKIPLEKLLIETDSPYLAPIPYRGKKNQPAYLLDIAKKIALI
EEHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
KEISLKELAKITTNNFFTLFNLNF
HHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MFLIDSHCHIDQMNIDQKNDDLLHQEIEKILNKAYENHVKKFLTVSTSIQNFYKTKKLLS
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYDSIFYSCGIHPLYCQKEIECLNELKKLSYDKCVIALGETGLDYYYSFETKNLQEKFFR
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHH
EHIRIAITLNKPIIIHSRNAIKDTIKILKEENAEKCGGILHSFTESEKSAFELLDMGFYI
HHEEEEEEECCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SFSGIITFKKSIELCNTLKKIPLEKLLIETDSPYLAPIPYRGKKNQPAYLLDIAKKIALI
EEHHHHHHHHHHHHHHHHHHCCHHHHEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
KEISLKELAKITTNNFFTLFNLNF
HHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438