Definition | Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome. |
---|---|
Accession | NC_004061 |
Length | 641,454 |
Click here to switch to the map view.
The map label for this gene is fabI
Identifier: 21672535
GI number: 21672535
Start: 291293
End: 292075
Strand: Direct
Name: fabI
Synonym: BUsg255
Alternate gene names: 21672535
Gene position: 291293-292075 (Clockwise)
Preceding gene: 21672534
Following gene: 21672536
Centisome position: 45.41
GC content: 23.63
Gene sequence:
>783_bases ATGGGAATTTTAAAAGGTAAAAAAATTTTAATTACTGGTATCTTAAATGAAAAATCAATTGCATTTGGTATTGCAAAATC AATGTATAAACAAGAAGCAGAATTAATTTTTGTGTGTCAAAACAAAAAAATAATTAATAAAATAAAATATTTAATTAAAT CAATTAATTACAATACTATTTTCTTTTGTGATGTATCTCACGATGAAAATATTAAAGAACTATTTTTTAATATAAAAAAA GTTTGGAATAATTTTGATGGATTAGTTCATTCTATTGCTTATTGTCCTAAAAAGCAAATGCATGAAGATTTCGTTGAAAG CAGCAGTAGAAAATCATTCAATATATGTCATGAAATTAGTTCATATAGTTTTTTAAGTATGGCGAGAGAATGTAAAAATA TGCTGAATAAATTTTCCTCTCTAGTAACATTATCTTATCTAGGTTCACAAAAAATAGTATCTAATTATAATATGATGGGT TTAGCAAAATCTTCTTTAGAAGCTAATGTTCGTTACATGGCTAATTCACTTGGTAAAAATAATATTAGAGTGAATGCTAT TTCTTCTGGACCTATTAAAACTACATCTTCTTATCAAATTAAAAACTTTAACAAAATACAAAAAATACATAAGTTATTTT CATTAACAAAAAATCATGTATCCAGTGAAGAAATAGGAAATGTTGCAGCCTTTTTATGTTCGGATTTATCTATTGGAATT ACTGGTTCAATTATTAATGTTGATCACGGTTTTAATTTAAATGGAATAAATTCTATAATTTAA
Upstream 100 bases:
>100_bases GTCATAAAAATTTATAATGTAATTTAAATATTTTTTGTCATTTTTGAGTGTAAAATATAAAATATTTTTTATATATCAAG TATATATTTGGAATTTTAAA
Downstream 100 bases:
>100_bases ATTCATGTAAATAAAATTTTTTAAATATGTTTTTTTCAGTTACTAATCTGAAATTTAACTTTAAAGTAATTTGATAAATA TAATATTAATTTTCATTAAA
Product: enoyl-[acyl-carrier-protein] reductase
Products: NA
Alternate protein names: NADH-dependent enoyl-ACP reductase
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MGILKGKKILITGILNEKSIAFGIAKSMYKQEAELIFVCQNKKIINKIKYLIKSINYNTIFFCDVSHDENIKELFFNIKK VWNNFDGLVHSIAYCPKKQMHEDFVESSSRKSFNICHEISSYSFLSMARECKNMLNKFSSLVTLSYLGSQKIVSNYNMMG LAKSSLEANVRYMANSLGKNNIRVNAISSGPIKTTSSYQIKNFNKIQKIHKLFSLTKNHVSSEEIGNVAAFLCSDLSIGI TGSIINVDHGFNLNGINSII
Sequences:
>Translated_260_residues MGILKGKKILITGILNEKSIAFGIAKSMYKQEAELIFVCQNKKIINKIKYLIKSINYNTIFFCDVSHDENIKELFFNIKK VWNNFDGLVHSIAYCPKKQMHEDFVESSSRKSFNICHEISSYSFLSMARECKNMLNKFSSLVTLSYLGSQKIVSNYNMMG LAKSSLEANVRYMANSLGKNNIRVNAISSGPIKTTSSYQIKNFNKIQKIHKLFSLTKNHVSSEEIGNVAAFLCSDLSIGI TGSIINVDHGFNLNGINSII >Mature_259_residues GILKGKKILITGILNEKSIAFGIAKSMYKQEAELIFVCQNKKIINKIKYLIKSINYNTIFFCDVSHDENIKELFFNIKKV WNNFDGLVHSIAYCPKKQMHEDFVESSSRKSFNICHEISSYSFLSMARECKNMLNKFSSLVTLSYLGSQKIVSNYNMMGL AKSSLEANVRYMANSLGKNNIRVNAISSGPIKTTSSYQIKNFNKIQKIHKLFSLTKNHVSSEEIGNVAAFLCSDLSIGIT GSIINVDHGFNLNGINSII
Specific function: Fatty acid biosynthesis pathway; second reduction step. [C]
COG id: COG0623
COG function: function code I; Enoyl-[acyl-carrier-protein] reductase (NADH)
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily
Homologues:
Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=47.1042471042471, Blast_Score=282, Evalue=2e-77,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): FABI_BUCAP (Q8K9Q6)
Other databases:
- EMBL: AE013218 - RefSeq: NP_660602.1 - ProteinModelPortal: Q8K9Q6 - SMR: Q8K9Q6 - EnsemblBacteria: EBBUCT00000000510 - GeneID: 1005457 - GenomeReviews: AE013218_GR - KEGG: bas:BUsg255 - GeneTree: EBGT00050000007854 - HOGENOM: HBG750976 - OMA: LVHCLAF - ProtClustDB: CLSK315843 - BioCyc: BAPH198804:BUSG255-MONOMER - GO: GO:0005488 - InterPro: IPR002198 - InterPro: IPR014358 - InterPro: IPR016040 - Gene3D: G3DSA:3.40.50.720 - PANTHER: PTHR19410 - PANTHER: PTHR19410:SF12 - PIRSF: PIRSF000094
Pfam domain/function: NA
EC number: =1.3.1.9
Molecular weight: Translated: 29268; Mature: 29137
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: PS00290 IG_MHC
Important sites: ACT_SITE 156-156
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILKGKKILITGILNEKSIAFGIAKSMYKQEAELIFVCQNKKIINKIKYLIKSINYNTI CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEE FFCDVSHDENIKELFFNIKKVWNNFDGLVHSIAYCPKKQMHEDFVESSSRKSFNICHEIS EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHH SYSFLSMARECKNMLNKFSSLVTLSYLGSQKIVSNYNMMGLAKSSLEANVRYMANSLGKN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC NIRVNAISSGPIKTTSSYQIKNFNKIQKIHKLFSLTKNHVSSEEIGNVAAFLCSDLSIGI CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCE TGSIINVDHGFNLNGINSII EEEEEEECCCCCCCCHHHCC >Mature Secondary Structure GILKGKKILITGILNEKSIAFGIAKSMYKQEAELIFVCQNKKIINKIKYLIKSINYNTI CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEE FFCDVSHDENIKELFFNIKKVWNNFDGLVHSIAYCPKKQMHEDFVESSSRKSFNICHEIS EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHH SYSFLSMARECKNMLNKFSSLVTLSYLGSQKIVSNYNMMGLAKSSLEANVRYMANSLGKN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC NIRVNAISSGPIKTTSSYQIKNFNKIQKIHKLFSLTKNHVSSEEIGNVAAFLCSDLSIGI CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCE TGSIINVDHGFNLNGINSII EEEEEEECCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12089438