Definition | Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome. |
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Accession | NC_004061 |
Length | 641,454 |
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The map label for this gene is argH
Identifier: 21672341
GI number: 21672341
Start: 55540
End: 56919
Strand: Direct
Name: argH
Synonym: BUsg048
Alternate gene names: 21672341
Gene position: 55540-56919 (Clockwise)
Preceding gene: 21672340
Following gene: 21672342
Centisome position: 8.66
GC content: 29.13
Gene sequence:
>1380_bases ATGTCGCTTTGGGGTGGAAGATTCCTTGATGAATCTAATGAAACATTTAAAAAATTTAATGCCTCTTTACCTTTTGATTA TATTTTAGTTAAAGAGGATATATTTGCATCTATTGCTTGGTCTAAATCTCTTGTTGAAGTTGGAGTTCTCACTCAGGAAG AGCAAAAAAAAATAGAGTCTGCACTAATTTCTTTAAAAGAAGAAATTTATAATAATTCAAAAAAAATTCTTGAAAGTGAC TACGAAGATATTCATAGTTGGATAGAAGCTAATCTTATTAAAAAAATAGGTGAATTAGGTAAAAAATTGCATACTGGTCG TAGTAGAAATGATCAAATTACTACTGATTTAAAATTGTGGTGTAAAAGAAAAATTTTTGTTTTATTAGACAGTATTATTA ATTTACAAAAAAATTTTATTTTTGTTGCTGAATTAAATGATGACGTCATAATGCCAGGATATACTCATTTGCAGCGTGCT CAACCGATCACTTTTTCTTATTGGTGTTTAGCTTACGTACAAATGTTTAAACGTGATGTTAGTCGTTTAAAAGATATTTT AAAAAGATTAGATATCAGTCCATTAGGTTCAGGTGCTCTATCTGGAACTGCATGGAATATTAATAGGAAAAAACTTGCTA TATCAATGGGTTTTAGTTCGGAAACTAATAATGCACTTGATAGTGTTTCTGATAGAGATTATCTTATAGAATTGCTATCA GCTTCTTCAATTAGTATGACTCATTTATCTCGTTTCTCTGAAGATTTAATTTTTTTTAACTCTAGTGAAGCTAATTTTAT TGAATTATCTGATTCTATTACATCTGGATCGTCTTTAATGCCGCAAAAAAAAAATCCAGATGCATTAGAGCTTATACGTG CTAAATGTGGTCGTGTTCATGGTGCTTTAGTCTCTATTTTAGTGGTTTTAAAATCTCTTCCCTTATCTTATAATAAAGAT CTTCAAGAAGATAAAGAAGGTCTATTTGATTCTCTTAAAACTTGGAATGATTCTTTGTTGATAGCTAGTTTAGTTTTAAA AAACATAAAATTAAATCGTTTATCGTGTCGTAAAGCTGCAGAAAAAGGTTATTCTAATGCCACGGAAATTGCAGATTATT TAGTAAAAAAAGGTATGACTTTTCGTGAAGCACATCATGTATCAGGTAAATTAGTGCTTCGAGCTATTAAGGAAAACAAA TCTTTGAATGATTTAGATCTCTCGATATTTCAAAGTTATAGTGCCCTTATTACTGATGATATATATAAAAATATTACGCT AGAAGCATGTCTTGAAAAACGTTCTTCTAAAGGTGGAGTAGCACCAAATGAGATACGTAAAGAGATTTTTAAAGAAAAAG AAAGATTAAATATTTTATAA
Upstream 100 bases:
>100_bases GGTTTTATTCGTCTTTTTTCTCTTTCTTCTAGAATACGAGCTCAAAACAAGTTAAAATAAAAACATAAATATTTTTAAAT CATTCTTATAGAGAAAATAT
Downstream 100 bases:
>100_bases AAGATTAATTTTTAATTGAAGTTTTTTATTTTTAAATTTTATAAGGCATTTAAATTTTTTTTAAATGCCGTAATTAAAAT TTATTTTATATAAAATTTTT
Product: argininosuccinate lyase
Products: NA
Alternate protein names: ASAL; Arginosuccinase
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSLWGGRFLDESNETFKKFNASLPFDYILVKEDIFASIAWSKSLVEVGVLTQEEQKKIESALISLKEEIYNNSKKILESD YEDIHSWIEANLIKKIGELGKKLHTGRSRNDQITTDLKLWCKRKIFVLLDSIINLQKNFIFVAELNDDVIMPGYTHLQRA QPITFSYWCLAYVQMFKRDVSRLKDILKRLDISPLGSGALSGTAWNINRKKLAISMGFSSETNNALDSVSDRDYLIELLS ASSISMTHLSRFSEDLIFFNSSEANFIELSDSITSGSSLMPQKKNPDALELIRAKCGRVHGALVSILVVLKSLPLSYNKD LQEDKEGLFDSLKTWNDSLLIASLVLKNIKLNRLSCRKAAEKGYSNATEIADYLVKKGMTFREAHHVSGKLVLRAIKENK SLNDLDLSIFQSYSALITDDIYKNITLEACLEKRSSKGGVAPNEIRKEIFKEKERLNIL
Sequences:
>Translated_459_residues MSLWGGRFLDESNETFKKFNASLPFDYILVKEDIFASIAWSKSLVEVGVLTQEEQKKIESALISLKEEIYNNSKKILESD YEDIHSWIEANLIKKIGELGKKLHTGRSRNDQITTDLKLWCKRKIFVLLDSIINLQKNFIFVAELNDDVIMPGYTHLQRA QPITFSYWCLAYVQMFKRDVSRLKDILKRLDISPLGSGALSGTAWNINRKKLAISMGFSSETNNALDSVSDRDYLIELLS ASSISMTHLSRFSEDLIFFNSSEANFIELSDSITSGSSLMPQKKNPDALELIRAKCGRVHGALVSILVVLKSLPLSYNKD LQEDKEGLFDSLKTWNDSLLIASLVLKNIKLNRLSCRKAAEKGYSNATEIADYLVKKGMTFREAHHVSGKLVLRAIKENK SLNDLDLSIFQSYSALITDDIYKNITLEACLEKRSSKGGVAPNEIRKEIFKEKERLNIL >Mature_458_residues SLWGGRFLDESNETFKKFNASLPFDYILVKEDIFASIAWSKSLVEVGVLTQEEQKKIESALISLKEEIYNNSKKILESDY EDIHSWIEANLIKKIGELGKKLHTGRSRNDQITTDLKLWCKRKIFVLLDSIINLQKNFIFVAELNDDVIMPGYTHLQRAQ PITFSYWCLAYVQMFKRDVSRLKDILKRLDISPLGSGALSGTAWNINRKKLAISMGFSSETNNALDSVSDRDYLIELLSA SSISMTHLSRFSEDLIFFNSSEANFIELSDSITSGSSLMPQKKNPDALELIRAKCGRVHGALVSILVVLKSLPLSYNKDL QEDKEGLFDSLKTWNDSLLIASLVLKNIKLNRLSCRKAAEKGYSNATEIADYLVKKGMTFREAHHVSGKLVLRAIKENKS LNDLDLSIFQSYSALITDDIYKNITLEACLEKRSSKGGVAPNEIRKEIFKEKERLNIL
Specific function: Arginine biosynthesis; eighth (last) step. [C]
COG id: COG0165
COG function: function code E; Argininosuccinate lyase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lyase 1 family. Argininosuccinate lyase subfamily
Homologues:
Organism=Homo sapiens, GI31541964, Length=447, Percent_Identity=42.0581655480984, Blast_Score=354, Evalue=1e-97, Organism=Homo sapiens, GI68303542, Length=447, Percent_Identity=42.0581655480984, Blast_Score=354, Evalue=1e-97, Organism=Homo sapiens, GI68303549, Length=447, Percent_Identity=40.0447427293065, Blast_Score=320, Evalue=2e-87, Organism=Homo sapiens, GI68303547, Length=447, Percent_Identity=39.5973154362416, Blast_Score=320, Evalue=2e-87, Organism=Escherichia coli, GI1790398, Length=457, Percent_Identity=60.3938730853392, Blast_Score=610, Evalue=1e-176, Organism=Saccharomyces cerevisiae, GI6321806, Length=458, Percent_Identity=43.2314410480349, Blast_Score=375, Evalue=1e-104, Organism=Drosophila melanogaster, GI221473854, Length=447, Percent_Identity=40.0447427293065, Blast_Score=333, Evalue=1e-91, Organism=Drosophila melanogaster, GI78706858, Length=447, Percent_Identity=40.0447427293065, Blast_Score=333, Evalue=1e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ARLY_BUCAP (Q8KA59)
Other databases:
- EMBL: AE013218 - RefSeq: NP_660408.1 - ProteinModelPortal: Q8KA59 - SMR: Q8KA59 - EnsemblBacteria: EBBUCT00000000471 - GeneID: 1005864 - GenomeReviews: AE013218_GR - KEGG: bas:BUsg048 - GeneTree: EBGT00050000007810 - HOGENOM: HBG539632 - OMA: MAEDLIF - ProtClustDB: PRK04833 - BioCyc: BAPH198804:BUSG048-MONOMER - GO: GO:0005737 - HAMAP: MF_00006 - InterPro: IPR009049 - InterPro: IPR003031 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 - PANTHER: PTHR11444:SF3 - PRINTS: PR00145 - PRINTS: PR00149 - TIGRFAMs: TIGR00838
Pfam domain/function: PF00206 Lyase_1; SSF48557 L-Aspartase-like
EC number: =4.3.2.1
Molecular weight: Translated: 52045; Mature: 51913
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLWGGRFLDESNETFKKFNASLPFDYILVKEDIFASIAWSKSLVEVGVLTQEEQKKIES CCCCCCCCCCCCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ALISLKEEIYNNSKKILESDYEDIHSWIEANLIKKIGELGKKLHTGRSRNDQITTDLKLW HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH CKRKIFVLLDSIINLQKNFIFVAELNDDVIMPGYTHLQRAQPITFSYWCLAYVQMFKRDV HHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH SRLKDILKRLDISPLGSGALSGTAWNINRKKLAISMGFSSETNNALDSVSDRDYLIELLS HHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHCCCCHHHHHHHHH ASSISMTHLSRFSEDLIFFNSSEANFIELSDSITSGSSLMPQKKNPDALELIRAKCGRVH CCCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GALVSILVVLKSLPLSYNKDLQEDKEGLFDSLKTWNDSLLIASLVLKNIKLNRLSCRKAA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH EKGYSNATEIADYLVKKGMTFREAHHVSGKLVLRAIKENKSLNDLDLSIFQSYSALITDD HCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IYKNITLEACLEKRSSKGGVAPNEIRKEIFKEKERLNIL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLWGGRFLDESNETFKKFNASLPFDYILVKEDIFASIAWSKSLVEVGVLTQEEQKKIES CCCCCCCCCCCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ALISLKEEIYNNSKKILESDYEDIHSWIEANLIKKIGELGKKLHTGRSRNDQITTDLKLW HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH CKRKIFVLLDSIINLQKNFIFVAELNDDVIMPGYTHLQRAQPITFSYWCLAYVQMFKRDV HHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH SRLKDILKRLDISPLGSGALSGTAWNINRKKLAISMGFSSETNNALDSVSDRDYLIELLS HHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHCCCCHHHHHHHHH ASSISMTHLSRFSEDLIFFNSSEANFIELSDSITSGSSLMPQKKNPDALELIRAKCGRVH CCCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GALVSILVVLKSLPLSYNKDLQEDKEGLFDSLKTWNDSLLIASLVLKNIKLNRLSCRKAA HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH EKGYSNATEIADYLVKKGMTFREAHHVSGKLVLRAIKENKSLNDLDLSIFQSYSALITDD HCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IYKNITLEACLEKRSSKGGVAPNEIRKEIFKEKERLNIL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12089438