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The map label for this gene is 30263936

Identifier: 30263936

GI number: 30263936

Start: 3750867

End: 3751292

Strand: Reverse

Name: 30263936

Synonym: BA_4074

Alternate gene names: NA

Gene position: 3751292-3750867 (Counterclockwise)

Preceding gene: 30263937

Following gene: 30263935

Centisome position: 71.76

GC content: 40.61

Gene sequence:

>426_bases
ATGGATCGTATTGATGTATTATTAAAAGCTTTTATTGCCACTTTCGGTGGCTTCTGTGGGTATTTCTTGGGAGGATGGGA
TGCAACATTGAAAATCTTAGTGACAATGGCAGTTATTGATTATTTAACTGGCATGATTGCAGCAGGGTATAACGGAGAGT
TAAAAAGTAAAGTGGGTTTCAAAGGCATCGCCAAAAAGGTGGTGCTTTTTCTTTTGGTCGGAGCGGCCGCTCAACTAGAC
TCGGCGCTTGGGAGTAACAGTGCTATTCGTGAAGCAACAATTTTCTTCTTCATGGGTAATGAATTACTGTCGCTCTTAGA
AAATGCCGGGCGAATGGGTATTCCACTCCCACAGGCTTTAACAAATGCAGTTGAAATTTTAGGTGGTAAACAAAAACAAG
AAGAGAAAAAAGGAGATGTTGAATAA

Upstream 100 bases:

>100_bases
TCAACAACACAATCTTATTTAAAGGATAGAAGTGAAGAAGATATTGCAGACATCTTTGGAATGGATCCAAGTTGTTTTGC
AGCTAAAAAGGAGTGAAAAG

Downstream 100 bases:

>100_bases
TGGAAATCAGAAAAAAATTAGTTGTCCCAAGTAAATACGGTACAAAGTGTCCATATACAATGAAACCTAAATATATCACT
GTTCATAACACATATAATGA

Product: prophage LambdaBa02, holin, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MDRIDVLLKAFIATFGGFCGYFLGGWDATLKILVTMAVIDYLTGMIAAGYNGELKSKVGFKGIAKKVVLFLLVGAAAQLD
SALGSNSAIREATIFFFMGNELLSLLENAGRMGIPLPQALTNAVEILGGKQKQEEKKGDVE

Sequences:

>Translated_141_residues
MDRIDVLLKAFIATFGGFCGYFLGGWDATLKILVTMAVIDYLTGMIAAGYNGELKSKVGFKGIAKKVVLFLLVGAAAQLD
SALGSNSAIREATIFFFMGNELLSLLENAGRMGIPLPQALTNAVEILGGKQKQEEKKGDVE
>Mature_141_residues
MDRIDVLLKAFIATFGGFCGYFLGGWDATLKILVTMAVIDYLTGMIAAGYNGELKSKVGFKGIAKKVVLFLLVGAAAQLD
SALGSNSAIREATIFFFMGNELLSLLENAGRMGIPLPQALTNAVEILGGKQKQEEKKGDVE

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 15037; Mature: 15037

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDVLLKAFIATFGGFCGYFLGGWDATLKILVTMAVIDYLTGMIAAGYNGELKSKVGF
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCH
KGIAKKVVLFLLVGAAAQLDSALGSNSAIREATIFFFMGNELLSLLENAGRMGIPLPQAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
TNAVEILGGKQKQEEKKGDVE
HHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MDRIDVLLKAFIATFGGFCGYFLGGWDATLKILVTMAVIDYLTGMIAAGYNGELKSKVGF
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCH
KGIAKKVVLFLLVGAAAQLDSALGSNSAIREATIFFFMGNELLSLLENAGRMGIPLPQAL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
TNAVEILGGKQKQEEKKGDVE
HHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]