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The map label for this gene is yomM [H]

Identifier: 30263937

GI number: 30263937

Start: 3751297

End: 3752274

Strand: Reverse

Name: yomM [H]

Synonym: BA_4075

Alternate gene names: 30263937

Gene position: 3752274-3751297 (Counterclockwise)

Preceding gene: 30263938

Following gene: 30263936

Centisome position: 71.78

GC content: 33.03

Gene sequence:

>978_bases
ATGATTAGTGTGAAACGAATAGTAGACCAAGCAATTTATGAGAAGTATGTTAGCCAGGAAAATAAAAGCCTAGTCAAAGA
TTTTCTTATTGAAAAGAAAGCACAAGGAAAAGCGGCAAGCACTTTAAAACAATATGGTTGGGATTTGCGAATTATTTTGT
TTCTAATACATCAACACTTCGAAAATAAAAGTCTTATTGAACTAACACGTAAAGACATTCGAAACTTATCTATTATTTTT
CAAGAGCTGGGAATGTCTAATGCGCGTGTAAATGGATTGATGAGTGCATTAAGGTCCGCATTAGAATTTTGTGCGGATGA
TGACGACTATGAATATGAATTTAATGTAGGTTCACGGGTTCGTGGTTTACCTAAGAATCCAGTTAGAGAAATTACTTTTA
TAACAGAAGAACAAATTGAGTGGTTAATCGATGAGCTAATAGTACAAGAAAAATATATGTTAGCAACTTATTTAGCACTT
TCTTATTACAGTGCCGCTAGAAAAAATGAGGTTTATCAGGTTCAAAAAGAAGAGTTGACAGAACGATATTACACAAATAT
TGTTCGAGGGAAACGTGGTAAGAAATTTAGATTATATTACAATCCCCGAGTGCAGAAATGTATTCGTTTATATATAAATC
AACGAGGTAAAGATACTATTCCAGATTTGTTTGTGCGTGTTTATAAGAATGGTGGTCGAAAACTTTTAAATAAAAGCGTA
TTTAATTACTGGTGCAAGATATTCGCTAAGATGCTGTACGAAAAAGAAGGTAAAGAATTTAAAATCAATCCGCACTGTTT
CCGTCATAGCAGATTAGATAATTTAAAAGTGCAAGGTGTACCACTAGAAAAATTAAAATCGCTTGCGAATCATTCGGATA
TATCAACAACACAATCTTATTTAAAGGATAGAAGTGAAGAAGATATTGCAGACATCTTTGGAATGGATCCAAGTTGTTTT
GCAGCTAAAAAGGAGTGA

Upstream 100 bases:

>100_bases
CATAAGCTGGTCTTTTTTATTTTGCACAAAATATGGCTTTGAGTAAATTCAATTCATAGATCAAGAGGAGTGAGTTCGCT
TCTCTTTTTATTTTGAGGAG

Downstream 100 bases:

>100_bases
AAAGATGGATCGTATTGATGTATTATTAAAAGCTTTTATTGCCACTTTCGGTGGCTTCTGTGGGTATTTCTTGGGAGGAT
GGGATGCAACATTGAAAATC

Product: prophage LambdaBa02, site-specific recombinase phage integrase family protein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MISVKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIF
QELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLAL
SYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSV
FNYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCF
AAKKE

Sequences:

>Translated_325_residues
MISVKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIF
QELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLAL
SYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSV
FNYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCF
AAKKE
>Mature_325_residues
MISVKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIF
QELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLAL
SYYSAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSV
FNYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCF
AAKKE

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38261; Mature: 38261

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHC
ENKSLIELTRKDIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRV
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
RGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYYSAARKNEVYQVQKEELT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSV
HHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
FNYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY
HHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHH
LKDRSEEDIADIFGMDPSCFAAKKE
HHCCCHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MISVKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHC
ENKSLIELTRKDIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRV
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
RGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYYSAARKNEVYQVQKEELT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSV
HHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
FNYWCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSY
HHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHH
LKDRSEEDIADIFGMDPSCFAAKKE
HHCCCHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]