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The map label for this gene is nodB [H]

Identifier: 77748721

GI number: 77748721

Start: 4138079

End: 4138855

Strand: Reverse

Name: nodB [H]

Synonym: XAC3499

Alternate gene names: 77748721

Gene position: 4138855-4138079 (Counterclockwise)

Preceding gene: 21244227

Following gene: 21244223

Centisome position: 79.97

GC content: 71.56

Gene sequence:

>777_bases
ATGACCACGCCGGAAACGCTGTATCGCACCCCTTCGCGCCCCTACCGCTGGGTAGGCCTGTTGGCCCTCTCGCAGGTAGC
GGTGGCACTGCTGTGGTGGCATCTGGGCTGGGCGTGGGGGCTGCCTGCGCTGCTGCTGTCGCATGCGCTGTTCGTGGTGC
CGGTGTTCCTGCCGCGCGCGCGGCTGTACGCGCCGGTGCTGGCGCGGTTATCCGGTCGCGTGCCGCAGGTGTGGCTGACC
ATCGACGATGGCCCGTCCGACGACACCCCGGCCATCCTCGACCTGCTGGATGCCTACGACGCCAAGGCAACGTTCTTCGT
GGTCGGCGCGCGTGCCGAGCAGCGGCCCGAGCTGGTGCGCGACATGGTGCGGCGCGGGCACGGCATCGGCAACCACAGCC
ACACCCATCCGCAAGCCTGGTTCTGGGCGCTGGGACCGCGCCGGATGGCACAGGAAATCGGCCAGGCGCAGCGCGTGCTG
GCGTGCATCACCGGCCAGGCGCCACGGCTGTACCGTTCGGTGGTCGGCATGACCAACCCCTTCGTCGCCTCGCCGCTGCG
CGCGCACGGCCTGACCCGGGTGGCCTGGAGCGCGCGCGGTTTCGACGGCGTGCGCTGCGAGCCGGACACCACCATCGCCC
GCATCGTGCGCGACCTGCAACCCGGCGCCATCGTGCTGCTGCATGAAGGCGCTGCACACGGCCACAACCTCACCATCCTG
CGCGGCGTACTGGAGGCGATGCGCGCGCGCGGCCTGGCGGGGCGGCGACCGCTCTGA

Upstream 100 bases:

>100_bases
GCGTATCGATACGGGAACGCAGGGCGGGATCGAGAGACATGGCAGCACTTCGGTGGCAGCGTGGAGACCGGGCATTCTAC
GCCGCATGGCATCATTGGGC

Downstream 100 bases:

>100_bases
GGTCCTGCGCACGGCGTGGCCGATGGCGTGGAAGCAGAGCGTATGTTGCCGGATCCATCTTCACTGTCGGCAGGCATGCT
TCGGTGCGACGCGACATTTC

Product: acetylxylan esterase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTTPETLYRTPSRPYRWVGLLALSQVAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLSGRVPQVWLT
IDDGPSDDTPAILDLLDAYDAKATFFVVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVL
ACITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHNLTIL
RGVLEAMRARGLAGRRPL

Sequences:

>Translated_258_residues
MTTPETLYRTPSRPYRWVGLLALSQVAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLSGRVPQVWLT
IDDGPSDDTPAILDLLDAYDAKATFFVVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVL
ACITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHNLTIL
RGVLEAMRARGLAGRRPL
>Mature_257_residues
TTPETLYRTPSRPYRWVGLLALSQVAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLSGRVPQVWLTI
DDGPSDDTPAILDLLDAYDAKATFFVVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLA
CITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHNLTILR
GVLEAMRARGLAGRRPL

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28562; Mature: 28430

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPETLYRTPSRPYRWVGLLALSQVAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRA
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLYAPVLARLSGRVPQVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAEQRPELVR
HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH
DMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVVGMTNP
HHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
FVASPLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHNLTIL
HHHCCHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
RGVLEAMRARGLAGRRPL
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTPETLYRTPSRPYRWVGLLALSQVAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLYAPVLARLSGRVPQVWLTIDDGPSDDTPAILDLLDAYDAKATFFVVGARAEQRPELVR
HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHH
DMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVVGMTNP
HHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
FVASPLRAHGLTRVAWSARGFDGVRCEPDTTIARIVRDLQPGAIVLLHEGAAHGHNLTIL
HHHCCHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
RGVLEAMRARGLAGRRPL
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]