Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is maeB [H]
Identifier: 77748718
GI number: 77748718
Start: 4098448
End: 4100757
Strand: Reverse
Name: maeB [H]
Synonym: XAC3470
Alternate gene names: 77748718
Gene position: 4100757-4098448 (Counterclockwise)
Preceding gene: 21244196
Following gene: 77748716
Centisome position: 79.23
GC content: 64.81
Gene sequence:
>2310_bases ATGTCCACCGACGACTTCAAACAGGCCGCCCTCGACTACCACCGCCAGCAGCCGGCCGGCAAGATCAAGGTCACCGCGAC CAAGCCGATGCTGACCCAGCGCGATCTGTCGCTGGCGTATTCGCCGGGCGTGGCGTTCGCCTGCGAGGCCATCGTCGAAG ATGCCACCCAGGCCAGCGAGCTCACCGCGCGCGGCAATCTGGTGGCGGTCATCACCAATGGCACGGCGGTGCTGGGCCTG GGCAACATCGGCCCGCTGGCCTCCAAGCCGGTGATGGAAGGCAAGGGCGTGTTGTTCCAGAAGTTCGCCGGCATCGACGT GTTCGATATCGAAATCAACGAGAACGACCCGGACAAGCTGGTGGACATCATCGCCAGCCTGGAGCCCACCTTCGGCGGCA TCAACCTGGAAGACATCAAGGCGCCGGAATGCTTCATCGTCGAGCGCAAGCTGCGCGAGCGCATGAACATCCCGGTATTC CATGACGACCAGCACGGCACCGCGATCATCGTCGGCGCCGCCGTGCTCAACGCGCTGGTGGTGACCGGCAAGAAGATCGA AGAGGTCAAGCTGGCCACCACCGGCATGGGCGCGGCCGGCATTTCCTGCGTCAACATGCTGGTGTCGCTGGGCCTGAAGC CGGAGAACATCCTGGCGCTGGACCGCGATGGCGTGATCCACACCGGCCGCACCGATCTGGATCCGGACAAGCAGCGCTAC GCCCGCGATACCGACAAGCGCACCCTGGCCGAAATCGTCGAAGGCGCGGATATTTTCCTCGGCCTGTCGGCCGCCGGCAT CCTCAAGCCGGAGATGGTCGCCAGCATGGCGCGCCAGCCGGTGATCTTCGCGCTGGCCAACCCCAATCCGGAAATCACCC CGGAAGCGGCCAAGGCCGTGCGCCCGGATTGCATCATCGGCACCGGTCGGTCGGACTATCCGAACCAGATCAACAACGTG CTGTGCTTTCCTTACCTGTTCCGCGGCGCGTTGGACGTGGGCGCCACTGGCATCAACGAAGAAATGAAGATCGCCTGCGT CAAGGCGATCGCGGCAATGGCGCGGCGCGAGGCCTCCGACCTGGGCGCGGCCTATGGCGGCGAGACCCCGAGCTTCGGCC CCGAATATCTGATTCCGCGGCCGCTGGACCCGCGCCTGCTGGTGGAGCTGTCGTCTGCGGTTGCGCAGGCGGCCATGGAT TCGGGCGTGGCCACGCGCCCGATCACCGACATGGAGGCCTACCGCGACAAGCTCGGCCAGTTCGTCTACCGCACCAGCCT GATGATGAAGCCGGTCTACGACCGCGCGCGTGCCGACAAGCAGCGCGTGGTGTATGCCGAGGGCGAAGAAGAAGTGGTGC TACGCGCGGTGCAGAACGTGGTCGACGAAGGCCTGGCCTTCCCGATCCTGATCGGCCGCCCGGACGTGATCGAAGCGCGT ATCGAACGCATGGGCCTGCGCCTGACCGCCGGCGTGGATTTCGAAATCACCAACATCCTCGACGACCCTCGCTTCAACGA TTACTGGCAGTACTACCACGCACTCACCGAGCGTCGTGGCGTGACCGTCACCGCGGCCAAGGAGCTGATGCGCTCGCGCC CGACCTTGATCGCGGCGGTGATGGTGGCGCGCGGCGAAGCCGACGCGATGCTGTCCGGCGTGGTCGGCCGCTTCCACAAG AAGCTCGGTTATGCGCGCAGCGTGATCCCGCTGGAACCGCGCGTGAGCTCCACCTCGGCGATGACCGGTGTGATCAACCA GCTTGGCGTGTTCTTCTTCCTGGATACCCATGTGCAGGAAGACCCCACCGTCGAGCAGGTGGTGGAAGCGACGTTGCAGG CGGCGTATCGCCTCAAGCTGTTCGGCATCGAGCCGAACATCGCCTTGTTGTCGCATTCCAACTTCGGCAGCCACGACTCG CGTGACGCGCTGAAGATGCGCCAGGTGCGCGAAGCGCTGCTCAAGCGCAAGCCCGAGCTCAACATCGACGGCGAAATGCA GGGCGACACCGCCTGGGACGAAGCGCTACGCAAGCAGATCATGCCCAACAGCACCTTGAAGGGTCGTGCCAACCTGTTCG TGTTGCCGAACCTGGAAGCGGCCAACATCGCCTATAACCTGGTGCGCGTGTTCACCGACGGCGTGGCGATCGGCCCGATC CTGATGGGTATCTCCAAGCCGGTGCATATCCTCACCACCAGCGCCACCTCGCGCCGGGTGATGAACATGACCGCCATCGC CGCGGTGGACGCACAGATCCGCAGACAGCGCGATGCGGAAAAAGCGGCCGCCGACAAGGGCAACGACTGA
Upstream 100 bases:
>100_bases ATCCGTGATTTCCCTGCCGCGCTGACAGCTGCGCGACAGGCCCTTGTTCAGGCAGGAGGGTAGAATTCAGCCTCCTGCGC CTTCGAGAACCACACCACCG
Downstream 100 bases:
>100_bases GGTCGCTGGTTGCCGGAAGCAGCCGATGACGGACGCGCCTCCAAGCCGTTAGTCGCGATCGCAGCACTGAGCGCCGTACG ACGGCGCTTGAAGGCCCCTC
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MSTDDFKQAALDYHRQQPAGKIKVTATKPMLTQRDLSLAYSPGVAFACEAIVEDATQASELTARGNLVAVITNGTAVLGL GNIGPLASKPVMEGKGVLFQKFAGIDVFDIEINENDPDKLVDIIASLEPTFGGINLEDIKAPECFIVERKLRERMNIPVF HDDQHGTAIIVGAAVLNALVVTGKKIEEVKLATTGMGAAGISCVNMLVSLGLKPENILALDRDGVIHTGRTDLDPDKQRY ARDTDKRTLAEIVEGADIFLGLSAAGILKPEMVASMARQPVIFALANPNPEITPEAAKAVRPDCIIGTGRSDYPNQINNV LCFPYLFRGALDVGATGINEEMKIACVKAIAAMARREASDLGAAYGGETPSFGPEYLIPRPLDPRLLVELSSAVAQAAMD SGVATRPITDMEAYRDKLGQFVYRTSLMMKPVYDRARADKQRVVYAEGEEEVVLRAVQNVVDEGLAFPILIGRPDVIEAR IERMGLRLTAGVDFEITNILDDPRFNDYWQYYHALTERRGVTVTAAKELMRSRPTLIAAVMVARGEADAMLSGVVGRFHK KLGYARSVIPLEPRVSSTSAMTGVINQLGVFFFLDTHVQEDPTVEQVVEATLQAAYRLKLFGIEPNIALLSHSNFGSHDS RDALKMRQVREALLKRKPELNIDGEMQGDTAWDEALRKQIMPNSTLKGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPI LMGISKPVHILTTSATSRRVMNMTAIAAVDAQIRRQRDAEKAAADKGND
Sequences:
>Translated_769_residues MSTDDFKQAALDYHRQQPAGKIKVTATKPMLTQRDLSLAYSPGVAFACEAIVEDATQASELTARGNLVAVITNGTAVLGL GNIGPLASKPVMEGKGVLFQKFAGIDVFDIEINENDPDKLVDIIASLEPTFGGINLEDIKAPECFIVERKLRERMNIPVF HDDQHGTAIIVGAAVLNALVVTGKKIEEVKLATTGMGAAGISCVNMLVSLGLKPENILALDRDGVIHTGRTDLDPDKQRY ARDTDKRTLAEIVEGADIFLGLSAAGILKPEMVASMARQPVIFALANPNPEITPEAAKAVRPDCIIGTGRSDYPNQINNV LCFPYLFRGALDVGATGINEEMKIACVKAIAAMARREASDLGAAYGGETPSFGPEYLIPRPLDPRLLVELSSAVAQAAMD SGVATRPITDMEAYRDKLGQFVYRTSLMMKPVYDRARADKQRVVYAEGEEEVVLRAVQNVVDEGLAFPILIGRPDVIEAR IERMGLRLTAGVDFEITNILDDPRFNDYWQYYHALTERRGVTVTAAKELMRSRPTLIAAVMVARGEADAMLSGVVGRFHK KLGYARSVIPLEPRVSSTSAMTGVINQLGVFFFLDTHVQEDPTVEQVVEATLQAAYRLKLFGIEPNIALLSHSNFGSHDS RDALKMRQVREALLKRKPELNIDGEMQGDTAWDEALRKQIMPNSTLKGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPI LMGISKPVHILTTSATSRRVMNMTAIAAVDAQIRRQRDAEKAAADKGND >Mature_768_residues STDDFKQAALDYHRQQPAGKIKVTATKPMLTQRDLSLAYSPGVAFACEAIVEDATQASELTARGNLVAVITNGTAVLGLG NIGPLASKPVMEGKGVLFQKFAGIDVFDIEINENDPDKLVDIIASLEPTFGGINLEDIKAPECFIVERKLRERMNIPVFH DDQHGTAIIVGAAVLNALVVTGKKIEEVKLATTGMGAAGISCVNMLVSLGLKPENILALDRDGVIHTGRTDLDPDKQRYA RDTDKRTLAEIVEGADIFLGLSAAGILKPEMVASMARQPVIFALANPNPEITPEAAKAVRPDCIIGTGRSDYPNQINNVL CFPYLFRGALDVGATGINEEMKIACVKAIAAMARREASDLGAAYGGETPSFGPEYLIPRPLDPRLLVELSSAVAQAAMDS GVATRPITDMEAYRDKLGQFVYRTSLMMKPVYDRARADKQRVVYAEGEEEVVLRAVQNVVDEGLAFPILIGRPDVIEARI ERMGLRLTAGVDFEITNILDDPRFNDYWQYYHALTERRGVTVTAAKELMRSRPTLIAAVMVARGEADAMLSGVVGRFHKK LGYARSVIPLEPRVSSTSAMTGVINQLGVFFFLDTHVQEDPTVEQVVEATLQAAYRLKLFGIEPNIALLSHSNFGSHDSR DALKMRQVREALLKRKPELNIDGEMQGDTAWDEALRKQIMPNSTLKGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPIL MGISKPVHILTTSATSRRVMNMTAIAAVDAQIRRQRDAEKAAADKGND
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=411, Percent_Identity=24.5742092457421, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI62420880, Length=411, Percent_Identity=24.5742092457421, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI239049447, Length=411, Percent_Identity=24.5742092457421, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI4505143, Length=409, Percent_Identity=22.9828850855746, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1788806, Length=755, Percent_Identity=58.9403973509934, Blast_Score=900, Evalue=0.0, Organism=Escherichia coli, GI1788635, Length=318, Percent_Identity=29.559748427673, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1788800, Length=323, Percent_Identity=29.1021671826625, Blast_Score=134, Evalue=3e-32, Organism=Escherichia coli, GI87081919, Length=401, Percent_Identity=22.4438902743142, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17537199, Length=345, Percent_Identity=27.8260869565217, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI281362674, Length=490, Percent_Identity=26.734693877551, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI21356279, Length=490, Percent_Identity=26.734693877551, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI281362672, Length=490, Percent_Identity=26.734693877551, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI78707242, Length=406, Percent_Identity=24.8768472906404, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI78707238, Length=406, Percent_Identity=24.8768472906404, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI78707240, Length=406, Percent_Identity=24.8768472906404, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 83691; Mature: 83560
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDDFKQAALDYHRQQPAGKIKVTATKPMLTQRDLSLAYSPGVAFACEAIVEDATQASE CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH LTARGNLVAVITNGTAVLGLGNIGPLASKPVMEGKGVLFQKFAGIDVFDIEINENDPDKL HEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCHHHH VDIIASLEPTFGGINLEDIKAPECFIVERKLRERMNIPVFHDDQHGTAIIVGAAVLNALV HHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHH VTGKKIEEVKLATTGMGAAGISCVNMLVSLGLKPENILALDRDGVIHTGRTDLDPDKQRY HCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCCCCCHHHH ARDTDKRTLAEIVEGADIFLGLSAAGILKPEMVASMARQPVIFALANPNPEITPEAAKAV HCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHC RPDCIIGTGRSDYPNQINNVLCFPYLFRGALDVGATGINEEMKIACVKAIAAMARREASD CCCEEEECCCCCCCHHHHCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LGAAYGGETPSFGPEYLIPRPLDPRLLVELSSAVAQAAMDSGVATRPITDMEAYRDKLGQ HCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH FVYRTSLMMKPVYDRARADKQRVVYAEGEEEVVLRAVQNVVDEGLAFPILIGRPDVIEAR HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH IERMGLRLTAGVDFEITNILDDPRFNDYWQYYHALTERRGVTVTAAKELMRSRPTLIAAV HHHCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH MVARGEADAMLSGVVGRFHKKLGYARSVIPLEPRVSSTSAMTGVINQLGVFFFLDTHVQE HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCC DPTVEQVVEATLQAAYRLKLFGIEPNIALLSHSNFGSHDSRDALKMRQVREALLKRKPEL CCCHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC NIDGEMQGDTAWDEALRKQIMPNSTLKGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPI CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHH LMGISKPVHILTTSATSRRVMNMTAIAAVDAQIRRQRDAEKAAADKGND HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure STDDFKQAALDYHRQQPAGKIKVTATKPMLTQRDLSLAYSPGVAFACEAIVEDATQASE CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHH LTARGNLVAVITNGTAVLGLGNIGPLASKPVMEGKGVLFQKFAGIDVFDIEINENDPDKL HEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCHHHH VDIIASLEPTFGGINLEDIKAPECFIVERKLRERMNIPVFHDDQHGTAIIVGAAVLNALV HHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHH VTGKKIEEVKLATTGMGAAGISCVNMLVSLGLKPENILALDRDGVIHTGRTDLDPDKQRY HCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCCCCCHHHH ARDTDKRTLAEIVEGADIFLGLSAAGILKPEMVASMARQPVIFALANPNPEITPEAAKAV HCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHC RPDCIIGTGRSDYPNQINNVLCFPYLFRGALDVGATGINEEMKIACVKAIAAMARREASD CCCEEEECCCCCCCHHHHCEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LGAAYGGETPSFGPEYLIPRPLDPRLLVELSSAVAQAAMDSGVATRPITDMEAYRDKLGQ HCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH FVYRTSLMMKPVYDRARADKQRVVYAEGEEEVVLRAVQNVVDEGLAFPILIGRPDVIEAR HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH IERMGLRLTAGVDFEITNILDDPRFNDYWQYYHALTERRGVTVTAAKELMRSRPTLIAAV HHHCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH MVARGEADAMLSGVVGRFHKKLGYARSVIPLEPRVSSTSAMTGVINQLGVFFFLDTHVQE HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCC DPTVEQVVEATLQAAYRLKLFGIEPNIALLSHSNFGSHDSRDALKMRQVREALLKRKPEL CCCHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC NIDGEMQGDTAWDEALRKQIMPNSTLKGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPI CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHH LMGISKPVHILTTSATSRRVMNMTAIAAVDAQIRRQRDAEKAAADKGND HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]