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The map label for this gene is rpoE [C]

Identifier: 21244846

GI number: 21244846

Start: 4850278

End: 4850805

Strand: Direct

Name: rpoE [C]

Synonym: XAC4129

Alternate gene names: 21244846

Gene position: 4850278-4850805 (Clockwise)

Preceding gene: 21244828

Following gene: 21244847

Centisome position: 93.72

GC content: 67.23

Gene sequence:

>528_bases
GTGTCGGCACATCCAAAGCGCGCCTGGGCACGTCTGTTCACCGAGCATGGCCCGGTGCTGCGCGGCTTCTTCGTGCGCCG
CGGAGCAAACGAGGACGCCGAAGACCTGGTCCAGGAAACCTATCTGCGCCTGCTGCGTGCGCATCAGCAGCCGGGCCAGG
CCATCGCCAACCCGGAAGCGTATCTCTATACCGTGGCGGTCAATCTGGCGCGCGAGCAGGCGGCGCGGCGCAGGCAGGCC
CCGCTGCGCATCGAGGACATGGAACAGTTCGCCCAACGGCTGGTGGCCGGTGACGATGTCGAAGACAGCGCCCAGCGGCA
ACAGCGCCAGCAACGGCTGCAGACCGTACTGGCCGGGCTGCCCGAGCGCGTGCGTGCGGTGCTGGTGATGCAGTACCGCG
ACGGCCTGAGCTACAAACAGATCGCCGAACGTCTGGGTGTGTCCTCGCACATGGTCAAGAAATACGTGGTGCGCGGCCTG
TCGGCCTGTCGATCGGCGCTGGCCGACGAGGGAGCGCAGTGGTGGTGA

Upstream 100 bases:

>100_bases
CCGCCTGCGTGCCTGCCGCCACGTCATGGGCAGCAACCGCGTCACCGCGACGTCATACGACGCCGCTAGCCTGCGCCCCT
GCAATCGGCCGGAGGTTGGG

Downstream 100 bases:

>100_bases
GCGTCGCGTCGCTGGCGGCGCGCCGCCTGACCGAGGAAGCGGCACACTGGCATGCGCTGCAACGCATGCAGCCGCTGGAT
GCCGACCAGCAGGCGCGTTT

Product: ECF sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor FecI; ECF Sigma Factor; ECF Family Sigma Factor; Sigma-; FecI Specialized Sigma Subunits Of RNA; Heme Uptake Regulator; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSAHPKRAWARLFTEHGPVLRGFFVRRGANEDAEDLVQETYLRLLRAHQQPGQAIANPEAYLYTVAVNLAREQAARRRQA
PLRIEDMEQFAQRLVAGDDVEDSAQRQQRQQRLQTVLAGLPERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGL
SACRSALADEGAQWW

Sequences:

>Translated_175_residues
MSAHPKRAWARLFTEHGPVLRGFFVRRGANEDAEDLVQETYLRLLRAHQQPGQAIANPEAYLYTVAVNLAREQAARRRQA
PLRIEDMEQFAQRLVAGDDVEDSAQRQQRQQRLQTVLAGLPERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGL
SACRSALADEGAQWW
>Mature_174_residues
SAHPKRAWARLFTEHGPVLRGFFVRRGANEDAEDLVQETYLRLLRAHQQPGQAIANPEAYLYTVAVNLAREQAARRRQAP
LRIEDMEQFAQRLVAGDDVEDSAQRQQRQQRLQTVLAGLPERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGLS
ACRSALADEGAQWW

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790746, Length=162, Percent_Identity=28.3950617283951, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19997; Mature: 19866

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHPKRAWARLFTEHGPVLRGFFVRRGANEDAEDLVQETYLRLLRAHQQPGQAIANPEA
CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
YLYTVAVNLAREQAARRRQAPLRIEDMEQFAQRLVAGDDVEDSAQRQQRQQRLQTVLAGL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGLSACRSALADEGAQWW
HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAHPKRAWARLFTEHGPVLRGFFVRRGANEDAEDLVQETYLRLLRAHQQPGQAIANPEA
CCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
YLYTVAVNLAREQAARRRQAPLRIEDMEQFAQRLVAGDDVEDSAQRQQRQQRLQTVLAGL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PERVRAVLVMQYRDGLSYKQIAERLGVSSHMVKKYVVRGLSACRSALADEGAQWW
HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA