Click here to switch to the map view.

The map label for this gene is ftrA [H]

Identifier: 21244781

GI number: 21244781

Start: 4760796

End: 4761806

Strand: Direct

Name: ftrA [H]

Synonym: XAC4064

Alternate gene names: 21244781

Gene position: 4760796-4761806 (Clockwise)

Preceding gene: 21244777

Following gene: 21244783

Centisome position: 91.99

GC content: 66.96

Gene sequence:

>1011_bases
ATGCCAACCTCCACACCCCGCGCGCGCCGCCATGGCTTGCCACCCCTGGTGGTGGTGGTGGCGTACGACCAGCTGGGCTT
GTTCGAATTCGGCATCACCACCGAAATCTTCGGATTGCCGCGCCCGGAAGTGGGCCCGGGCTGGTATCGGTTTGCGATTG
CAGCGGCCGAACCCGGCCCGCTGCGCGCACTTGGCGGGCTTCGCCTGGAAGTGGATGGCGGGCTGGATCTTCTCGATGCT
GCGCACACCATCATCGTTCCCAGCTGGAGAGATACCAGCGCGTCGGCACCGGCTGCGCTGATCAAGGCGTTGCAACGTGC
GCACAAGCGAAGGACGCGCATCGTCTCGATCTGCGCCGGCGCGTTCGTGCTGGCCCAGGCGGGTCTACTGCAGGGGCGCA
GGGCCACCACGCATTGGCGCAATGCCGAGGTGCTGGCCAGCCATTACCCGCAAATCACCGTGGAGCCGGGCGTGCTCTAC
GTCGATGAGGGCGACATCCTGACCTCGGCCGGCAGCGCTGCCGGCATCGATCTCTGCCTGCATATCGTGCGCGCGGATTT
TGGCCCGGCAGTGGCCAACCAGGTCGCCAAACGGCTGGTGATGCCGGTACACCGCGATGGTGGGCAAGCCCAGTTCATCG
ACCGCCCGGTGCCGCCGATCCACGAAAGCACCCGGCTCGGCCCCCTGCTCGAGCGCATCACCCAGGACCTCACCGCCAAC
CACTGCGTGGACGCACTGGCCAGCGCGGCAGGTATGAGCCGGCGCACGTTCTTGCGCAGGTTTCAGGCCACCACCGGCAT
GTCGCCGGGCAAATGGATCGTCAACGAACGGCTCAACCGTGCGCGCGAGATGCTGGAAACCTCCGGCGCCGACATCGAAC
AGATCGCAACGCGCTGCGGCTTCGGCTCGACCGAAACGCTACGGCACCACTTCCGCCGCGCGCTGGCGTTGTCGCCAACG
CAATACCGGCGCGTGTTCGGCGGGCATCGCGACGCTGGCGAGGGGATTTGA

Upstream 100 bases:

>100_bases
CTGGCCAATGGCTCAGCCCGCACGACAAGGACCAGGCGCCATGTTGCGCAGCAGCAGGCGATGGGTGAAAGTGGCGTAAA
CGCCATCTAGCGGTCATTTC

Downstream 100 bases:

>100_bases
GCGCGTGGATGCATATCGCGCGCCATAGCCCGGCGGCGGCGCACAGACGCCGCCCGCATGATGACGCCTGTGCGGCTCTT
CAGACCTTCGGCGGCGTGGA

Product: transcriptional activator FtrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYRFAIAAAEPGPLRALGGLRLEVDGGLDLLDA
AHTIIVPSWRDTSASAPAALIKALQRAHKRRTRIVSICAGAFVLAQAGLLQGRRATTHWRNAEVLASHYPQITVEPGVLY
VDEGDILTSAGSAAGIDLCLHIVRADFGPAVANQVAKRLVMPVHRDGGQAQFIDRPVPPIHESTRLGPLLERITQDLTAN
HCVDALASAAGMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCGFGSTETLRHHFRRALALSPT
QYRRVFGGHRDAGEGI

Sequences:

>Translated_336_residues
MPTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYRFAIAAAEPGPLRALGGLRLEVDGGLDLLDA
AHTIIVPSWRDTSASAPAALIKALQRAHKRRTRIVSICAGAFVLAQAGLLQGRRATTHWRNAEVLASHYPQITVEPGVLY
VDEGDILTSAGSAAGIDLCLHIVRADFGPAVANQVAKRLVMPVHRDGGQAQFIDRPVPPIHESTRLGPLLERITQDLTAN
HCVDALASAAGMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCGFGSTETLRHHFRRALALSPT
QYRRVFGGHRDAGEGI
>Mature_335_residues
PTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYRFAIAAAEPGPLRALGGLRLEVDGGLDLLDAA
HTIIVPSWRDTSASAPAALIKALQRAHKRRTRIVSICAGAFVLAQAGLLQGRRATTHWRNAEVLASHYPQITVEPGVLYV
DEGDILTSAGSAAGIDLCLHIVRADFGPAVANQVAKRLVMPVHRDGGQAQFIDRPVPPIHESTRLGPLLERITQDLTANH
CVDALASAAGMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCGFGSTETLRHHFRRALALSPTQ
YRRVFGGHRDAGEGI

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36498; Mature: 36367

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYRFAIAAAEPGP
CCCCCCCHHHCCCCCEEEEEEECCCCHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCC
LRALGGLRLEVDGGLDLLDAAHTIIVPSWRDTSASAPAALIKALQRAHKRRTRIVSICAG
CHHHCCEEEEECCCCHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFVLAQAGLLQGRRATTHWRNAEVLASHYPQITVEPGVLYVDEGDILTSAGSAAGIDLCL
HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEECCCEEEEECCCEEECCCCHHHHHHHH
HIVRADFGPAVANQVAKRLVMPVHRDGGQAQFIDRPVPPIHESTRLGPLLERITQDLTAN
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
HCVDALASAAGMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCG
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
FGSTETLRHHFRRALALSPTQYRRVFGGHRDAGEGI
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYRFAIAAAEPGP
CCCCCCHHHCCCCCEEEEEEECCCCHHHHCCHHHHHCCCCCCCCCCEEEEEEEECCCCC
LRALGGLRLEVDGGLDLLDAAHTIIVPSWRDTSASAPAALIKALQRAHKRRTRIVSICAG
CHHHCCEEEEECCCCHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFVLAQAGLLQGRRATTHWRNAEVLASHYPQITVEPGVLYVDEGDILTSAGSAAGIDLCL
HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEECCCEEEEECCCEEECCCCHHHHHHHH
HIVRADFGPAVANQVAKRLVMPVHRDGGQAQFIDRPVPPIHESTRLGPLLERITQDLTAN
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
HCVDALASAAGMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCG
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
FGSTETLRHHFRRALALSPTQYRRVFGGHRDAGEGI
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]