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The map label for this gene is xynB [H]

Identifier: 21244775

GI number: 21244775

Start: 4753560

End: 4755068

Strand: Direct

Name: xynB [H]

Synonym: XAC4058

Alternate gene names: 21244775

Gene position: 4753560-4755068 (Clockwise)

Preceding gene: 21244769

Following gene: 21244777

Centisome position: 91.85

GC content: 62.96

Gene sequence:

>1509_bases
ATGGCGCAGCACGCAGCGCCGCGCACGATCCAGCTGGATCTGGCCACGGCTGGCGCGCCGGTCGATCGTTTCTACGACCT
GTCGGTCGGCTCGGATTTTCCCGGCACCTTGATCCGCAACGACACGCAGGCGCATCTGGTGCCTGCAATGCAGGAGTTGG
GGTTTCGCTACATCCGCTTCCACGATGTCTTCCATGATGTGCTCGGCACCGTCAAAGAGGTCGACGGCAAACTGGTGTAC
GACTGGACCAAGCTGGACCAGTTGTACGACGCGCTGCTGGCCAAGCGGATTCGCCCGTTCGTCGAATTGGGTTTCACACC
AAGCGCGATGAAAACCTCAGAGCAGACGCTGTTCTACTGGAAGGGCAACACCTCGCATCCGGATCCTGCCAAGTGGACGC
AGTTGATCGATGCGTATGTGCGCCACATCCGCGCGCGCTACGGCGCCGAGGAAGTGCGCCAGTGGTATTTCGAAGTGTGG
AACGAGCCCAATCTGAAGGATTTCTGGGAGAACGCCGACCAGCAGGCGTACTTCGATCTGTATGCGAACACGGCGCGCAC
CATCAAGGCGATCGACCCGCAACTGCGCGTTGGCGGCCCATCGACGGCAGGCGCCGCCTGGGTACCCGAGTTACTGGCCT
TCGTCGCCAAGAACACGCTGCCGATCGATTTCGTCACGACGCATACCTATGGCGTGGATGGCGGGTTTCTCGATGAGAAC
GGCAAGCAGGACACCAAGCTGTCCGCATCGCCGGATGCCATCGTCGGCGATGTGCGACGCGTGCGCGCGCAGATCCAGGC
CTCGCCATTTCCCAACCTGCCGCTGTACTTCACCGAGTGGAGCAGCAGCTATACGCCGCGCGATTTCGTCCACGACAGTT
ACATCAGCGCGCCGTACATCCTGACCAAGCTCAAGCAGGTGCAAGGCCTGGTGCAGGGCATGAGTTACTGGACCTATACC
GATCTGTTCGAAGAACCCGGCCCACCGCCCACGCCCTTCCACGGCGGGTTTGGGCTGATGAATCGCGAAGGCATTCGCAA
ACCGGCCTGGTTCGCTTACAAGTACTTGCATGCGCTCAAGGGCCGCGATGTGCCGCTGAGCGACGCACATTCCCTCGCCG
CAGTGGACGGCACGCGCGTCGCCGCACTGGTGTGGGATTGGCAGCAGCCCGTGCAGGCGGTGAGCAATACGCCGTTCTAC
ACCAAACAGGTGCCCGCCACCGACAGCGCGCCGCTGCGCATGCGCATGACCCATGTGCCTGCCGGCACGTACCAGCTGCA
GGTGCGCAAGACCGGCTATCGGCGTAACGACCCGTTGTCGCTGTACATCGACATGGGCATGCCCAAGGACCTGGCGCCGC
GCCAGTTGACGCAGCTGCGACAGGCCACGCGCGATGCCCCCGAACAGGATCGGCGTGTGCGTGTGGGCGCCGATGGCGTG
GTCGAGATCAACGTGCCGATGCGCAGCAACGATGTGGTGCTGCTGACGCTGGAGCCGGTGGCGCGCTGA

Upstream 100 bases:

>100_bases
CCGCGCATGCGTTACGCTGCCGGCTCGAACTTCAGCAGCAGCGACGATGCGGTCAGATTTCTTGTTGGTAGCGGCACTGT
GCTGCGCAGCGACCTCTGCC

Downstream 100 bases:

>100_bases
CCGCAGAAGTCGGGGTGCCACGCGTTAGAACGACGGGGCGCGACCCGCCCATGCAGACCGTGCCACGCGCATGGACCACA
GCCGGCCCAGGGTGGGCGCA

Product: beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MAQHAAPRTIQLDLATAGAPVDRFYDLSVGSDFPGTLIRNDTQAHLVPAMQELGFRYIRFHDVFHDVLGTVKEVDGKLVY
DWTKLDQLYDALLAKRIRPFVELGFTPSAMKTSEQTLFYWKGNTSHPDPAKWTQLIDAYVRHIRARYGAEEVRQWYFEVW
NEPNLKDFWENADQQAYFDLYANTARTIKAIDPQLRVGGPSTAGAAWVPELLAFVAKNTLPIDFVTTHTYGVDGGFLDEN
GKQDTKLSASPDAIVGDVRRVRAQIQASPFPNLPLYFTEWSSSYTPRDFVHDSYISAPYILTKLKQVQGLVQGMSYWTYT
DLFEEPGPPPTPFHGGFGLMNREGIRKPAWFAYKYLHALKGRDVPLSDAHSLAAVDGTRVAALVWDWQQPVQAVSNTPFY
TKQVPATDSAPLRMRMTHVPAGTYQLQVRKTGYRRNDPLSLYIDMGMPKDLAPRQLTQLRQATRDAPEQDRRVRVGADGV
VEINVPMRSNDVVLLTLEPVAR

Sequences:

>Translated_502_residues
MAQHAAPRTIQLDLATAGAPVDRFYDLSVGSDFPGTLIRNDTQAHLVPAMQELGFRYIRFHDVFHDVLGTVKEVDGKLVY
DWTKLDQLYDALLAKRIRPFVELGFTPSAMKTSEQTLFYWKGNTSHPDPAKWTQLIDAYVRHIRARYGAEEVRQWYFEVW
NEPNLKDFWENADQQAYFDLYANTARTIKAIDPQLRVGGPSTAGAAWVPELLAFVAKNTLPIDFVTTHTYGVDGGFLDEN
GKQDTKLSASPDAIVGDVRRVRAQIQASPFPNLPLYFTEWSSSYTPRDFVHDSYISAPYILTKLKQVQGLVQGMSYWTYT
DLFEEPGPPPTPFHGGFGLMNREGIRKPAWFAYKYLHALKGRDVPLSDAHSLAAVDGTRVAALVWDWQQPVQAVSNTPFY
TKQVPATDSAPLRMRMTHVPAGTYQLQVRKTGYRRNDPLSLYIDMGMPKDLAPRQLTQLRQATRDAPEQDRRVRVGADGV
VEINVPMRSNDVVLLTLEPVAR
>Mature_501_residues
AQHAAPRTIQLDLATAGAPVDRFYDLSVGSDFPGTLIRNDTQAHLVPAMQELGFRYIRFHDVFHDVLGTVKEVDGKLVYD
WTKLDQLYDALLAKRIRPFVELGFTPSAMKTSEQTLFYWKGNTSHPDPAKWTQLIDAYVRHIRARYGAEEVRQWYFEVWN
EPNLKDFWENADQQAYFDLYANTARTIKAIDPQLRVGGPSTAGAAWVPELLAFVAKNTLPIDFVTTHTYGVDGGFLDENG
KQDTKLSASPDAIVGDVRRVRAQIQASPFPNLPLYFTEWSSSYTPRDFVHDSYISAPYILTKLKQVQGLVQGMSYWTYTD
LFEEPGPPPTPFHGGFGLMNREGIRKPAWFAYKYLHALKGRDVPLSDAHSLAAVDGTRVAALVWDWQQPVQAVSNTPFYT
KQVPATDSAPLRMRMTHVPAGTYQLQVRKTGYRRNDPLSLYIDMGMPKDLAPRQLTQLRQATRDAPEQDRRVRVGADGVV
EINVPMRSNDVVLLTLEPVAR

Specific function: Unknown

COG id: COG3664

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 39 family [H]

Homologues:

Organism=Homo sapiens, GI110611239, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000514
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF01229 Glyco_hydro_39 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 56768; Mature: 56637

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS01027 GLYCOSYL_HYDROL_F39

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQHAAPRTIQLDLATAGAPVDRFYDLSVGSDFPGTLIRNDTQAHLVPAMQELGFRYIRF
CCCCCCCCEEEEEEECCCCCHHHEEECCCCCCCCCHHCCCCCHHHHHHHHHHCCCHHHHH
HDVFHDVLGTVKEVDGKLVYDWTKLDQLYDALLAKRIRPFVELGFTPSAMKTSEQTLFYW
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEE
KGNTSHPDPAKWTQLIDAYVRHIRARYGAEEVRQWYFEVWNEPNLKDFWENADQQAYFDL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEHHH
YANTARTIKAIDPQLRVGGPSTAGAAWVPELLAFVAKNTLPIDFVTTHTYGVDGGFLDEN
HHCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
GKQDTKLSASPDAIVGDVRRVRAQIQASPFPNLPLYFTEWSSSYTPRDFVHDSYISAPYI
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHH
LTKLKQVQGLVQGMSYWTYTDLFEEPGPPPTPFHGGFGLMNREGIRKPAWFAYKYLHALK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GRDVPLSDAHSLAAVDGTRVAALVWDWQQPVQAVSNTPFYTKQVPATDSAPLRMRMTHVP
CCCCCCCCCCCEEEECCCEEEEEEECCHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECC
AGTYQLQVRKTGYRRNDPLSLYIDMGMPKDLAPRQLTQLRQATRDAPEQDRRVRVGADGV
CCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCE
VEINVPMRSNDVVLLTLEPVAR
EEEECCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
AQHAAPRTIQLDLATAGAPVDRFYDLSVGSDFPGTLIRNDTQAHLVPAMQELGFRYIRF
CCCCCCCEEEEEEECCCCCHHHEEECCCCCCCCCHHCCCCCHHHHHHHHHHCCCHHHHH
HDVFHDVLGTVKEVDGKLVYDWTKLDQLYDALLAKRIRPFVELGFTPSAMKTSEQTLFYW
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEE
KGNTSHPDPAKWTQLIDAYVRHIRARYGAEEVRQWYFEVWNEPNLKDFWENADQQAYFDL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCCCEEHHH
YANTARTIKAIDPQLRVGGPSTAGAAWVPELLAFVAKNTLPIDFVTTHTYGVDGGFLDEN
HHCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
GKQDTKLSASPDAIVGDVRRVRAQIQASPFPNLPLYFTEWSSSYTPRDFVHDSYISAPYI
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHH
LTKLKQVQGLVQGMSYWTYTDLFEEPGPPPTPFHGGFGLMNREGIRKPAWFAYKYLHALK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GRDVPLSDAHSLAAVDGTRVAALVWDWQQPVQAVSNTPFYTKQVPATDSAPLRMRMTHVP
CCCCCCCCCCCEEEECCCEEEEEEECCHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECC
AGTYQLQVRKTGYRRNDPLSLYIDMGMPKDLAPRQLTQLRQATRDAPEQDRRVRVGADGV
CCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCE
VEINVPMRSNDVVLLTLEPVAR
EEEECCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10368143 [H]