Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is 21244767
Identifier: 21244767
GI number: 21244767
Start: 4744711
End: 4745724
Strand: Direct
Name: 21244767
Synonym: XAC4050
Alternate gene names: NA
Gene position: 4744711-4745724 (Clockwise)
Preceding gene: 21244766
Following gene: 21244768
Centisome position: 91.68
GC content: 68.15
Gene sequence:
>1014_bases ATGCCGGCTGAGCCACGCGCCATCCAAGAGCGTCACGGCCTGGACCCGCAACAGCTGGACCCGGCCATCCTTCGCTCCAC CACGCCGCTGGTGCTGCGGGGGCTGGTGCGCGACTGGCCGCTGGCCCGCGCCGGTGCCAGTTCTGCGCAGGCCGCTGCCG CCTACCTGCGTGGCTTCGACCGCGGCGAAGCGGTGGTGGCGCAGGTTGGACCACCGGAGATCGGTGGGCGCTTTTTCTAC AACGCGGACATGAGCGGCTTCAACTTCCGCCCCGAACGCGTGCCGTTGGGCGTGGTGCTGGACACCTTGCTGCGCGACCT GCACACCTCCCAGCCACCGGCGATCTATGTCGGCTCCACCACGCTGGACACCTACCTGCCCGGGTTGCGTGCGCATAACC CGATCGCGCTGCCGCAGGGCGAGCCGCTGGCCAGCATCTGGATCGGCAACCGCACTCGCATCGCCGCCCATCAGGACCTG CCCGACAACCTGGCCTGCGTGGTCGCCGGGCGACGCCGTTTTACCCTGTTCCCGCCCGATCAGCTGGCCAATCTCTACAT CGGTCCGCTGGATCTCACCCCGGCCGGGCAGCCGGTCAGCCTGGTGGACATCGCCGCACCGGACCTGCAGCGTTTTCCAC GCTATGCGCAGGCGCTGGACCACGCCCTGGTCGCCGAGTTGGCGCCGGGCGATGCGCTGTTCATTCCCAGCATGTGGTGG CATCACGTCGAGGCACTGGAGAGCTTCAACGTCTTGGTCAATTTCTGGTGGCGGCAGGGCCCGGCCTATATGGATTCGCC GATGAACGCGCTGATGCTGGCGCTGCTGACCATTCGCGACCTGCCGGCCGAACAACGCGCCACCTGGCAGGAAGTGTTCC GTCACTATGTCTTCGAGCCCGACGACAGCACCGCCGCGCATCTGCCCGATGCCGCGCGCGGTGTGCTGGCGCCGATGGAC GAGTCCAGCGCGCGCAGCCTGCGTGCGCGGCTGCTGCAACGCTTGAATCGCTGA
Upstream 100 bases:
>100_bases CTGCTCGAACTGCACCGGCATGGCGATCTGGAACCGCTGTACATGGCGGTGGCCTCGATTGCGCAATTGCGCCATCTGCT CGAACGCATGAACCGCCGTC
Downstream 100 bases:
>100_bases GGATTTGACCATGCCCGACACCACGCCTTCGGACCCGCAGCAGCGCCCGGTACGCCGCGTCGTCATCGCCGGTGGCGGCA CGGCCGGCTGGATGGCGGCT
Product: Pass1-related protein
Products: NA
Alternate protein names: Transcription Factor Jumonji Domain-Containing Protein; Transcription Factor Jumonji Jmjc Domain-Containing Protein; Transcription Factor Jumonji/Aspartyl Beta-Hydroxylase; Transcription Factor Jumonji JmjC Domain Protein; Transcription Factor Jumonji JmjC Domain-Containing Protein; Transcription Factor Jumonji; PASs1-Like Protein; Transcription Factor Jumonji JmjC; Acetyltransferase; PASS1 Domain-Containing Protein; PASs1-Related Protein; JmjC Domain-Containing Protein
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MPAEPRAIQERHGLDPQQLDPAILRSTTPLVLRGLVRDWPLARAGASSAQAAAAYLRGFDRGEAVVAQVGPPEIGGRFFY NADMSGFNFRPERVPLGVVLDTLLRDLHTSQPPAIYVGSTTLDTYLPGLRAHNPIALPQGEPLASIWIGNRTRIAAHQDL PDNLACVVAGRRRFTLFPPDQLANLYIGPLDLTPAGQPVSLVDIAAPDLQRFPRYAQALDHALVAELAPGDALFIPSMWW HHVEALESFNVLVNFWWRQGPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFEPDDSTAAHLPDAARGVLAPMD ESSARSLRARLLQRLNR
Sequences:
>Translated_337_residues MPAEPRAIQERHGLDPQQLDPAILRSTTPLVLRGLVRDWPLARAGASSAQAAAAYLRGFDRGEAVVAQVGPPEIGGRFFY NADMSGFNFRPERVPLGVVLDTLLRDLHTSQPPAIYVGSTTLDTYLPGLRAHNPIALPQGEPLASIWIGNRTRIAAHQDL PDNLACVVAGRRRFTLFPPDQLANLYIGPLDLTPAGQPVSLVDIAAPDLQRFPRYAQALDHALVAELAPGDALFIPSMWW HHVEALESFNVLVNFWWRQGPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFEPDDSTAAHLPDAARGVLAPMD ESSARSLRARLLQRLNR >Mature_336_residues PAEPRAIQERHGLDPQQLDPAILRSTTPLVLRGLVRDWPLARAGASSAQAAAAYLRGFDRGEAVVAQVGPPEIGGRFFYN ADMSGFNFRPERVPLGVVLDTLLRDLHTSQPPAIYVGSTTLDTYLPGLRAHNPIALPQGEPLASIWIGNRTRIAAHQDLP DNLACVVAGRRRFTLFPPDQLANLYIGPLDLTPAGQPVSLVDIAAPDLQRFPRYAQALDHALVAELAPGDALFIPSMWWH HVEALESFNVLVNFWWRQGPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFEPDDSTAAHLPDAARGVLAPMDE SSARSLRARLLQRLNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI148596936, Length=109, Percent_Identity=38.5321100917431, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI21314714, Length=153, Percent_Identity=31.3725490196078, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI167860114, Length=261, Percent_Identity=27.9693486590038, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI223942014, Length=239, Percent_Identity=28.0334728033473, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI223942018, Length=239, Percent_Identity=28.0334728033473, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI89242134, Length=107, Percent_Identity=34.5794392523364, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24663831, Length=136, Percent_Identity=30.8823529411765, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37271; Mature: 37140
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAEPRAIQERHGLDPQQLDPAILRSTTPLVLRGLVRDWPLARAGASSAQAAAAYLRGFD CCCCCCHHHHHCCCCHHHCCHHHHHCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCC RGEAVVAQVGPPEIGGRFFYNADMSGFNFRPERVPLGVVLDTLLRDLHTSQPPAIYVGST CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC TLDTYLPGLRAHNPIALPQGEPLASIWIGNRTRIAAHQDLPDNLACVVAGRRRFTLFPPD HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCEEEECCHH QLANLYIGPLDLTPAGQPVSLVDIAAPDLQRFPRYAQALDHALVAELAPGDALFIPSMWW HHHCEEECCEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH HHVEALESFNVLVNFWWRQGPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFEP HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC DDSTAAHLPDAARGVLAPMDESSARSLRARLLQRLNR CCCCHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure PAEPRAIQERHGLDPQQLDPAILRSTTPLVLRGLVRDWPLARAGASSAQAAAAYLRGFD CCCCCHHHHHCCCCHHHCCHHHHHCCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCC RGEAVVAQVGPPEIGGRFFYNADMSGFNFRPERVPLGVVLDTLLRDLHTSQPPAIYVGST CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC TLDTYLPGLRAHNPIALPQGEPLASIWIGNRTRIAAHQDLPDNLACVVAGRRRFTLFPPD HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCEEEEEECCCEEEECCHH QLANLYIGPLDLTPAGQPVSLVDIAAPDLQRFPRYAQALDHALVAELAPGDALFIPSMWW HHHCEEECCEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHH HHVEALESFNVLVNFWWRQGPAYMDSPMNALMLALLTIRDLPAEQRATWQEVFRHYVFEP HHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC DDSTAAHLPDAARGVLAPMDESSARSLRARLLQRLNR CCCCHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA