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The map label for this gene is yjgF [C]

Identifier: 21244117

GI number: 21244117

Start: 3999352

End: 3999732

Strand: Reverse

Name: yjgF [C]

Synonym: XAC3392

Alternate gene names: 21244117

Gene position: 3999732-3999352 (Counterclockwise)

Preceding gene: 21244118

Following gene: 21244116

Centisome position: 77.28

GC content: 65.35

Gene sequence:

>381_bases
ATGTCCCAGATCATCCATACCGACCAGGCGCCTGCCGCCATCGGCCCGTATTCGCAGGCCGTGCGTGCCGGCAACACCGT
GTATTTCTCCGGCCAGATCCCGTTGGATCCCGCCACCGGCGAGATCGTGCCAGGCGACATCGGTGCGCAGGCGCGGCGTG
CGTTCGACAACCTCAAGGCAGTGGCCGAAGCGGCCGGCGGCTCGCTCGACAAGATCGTGCGCCTGGGCCTGTATATCACC
GACCTGGGGCAGTTCGCTGCCGTCAACGCGGTGATGCAGGAGTATTTCCAGGCGCCGTTCCCGGCGCGTTCGACCATAGA
AGTCTCCGGCCTGCCCAAGGGTGCCGGCTTCGAGGTCGATGCAGTGATGGTGATCGAGTGA

Upstream 100 bases:

>100_bases
CAGAGCGTCGGGCGCCAGTAGCGCCTGGCGCGCTCGCGCAACAGTCGAGCAAATCCGCACAAAGGCCTAAACTGCGGCAA
CCCTTTGCAGTGGAGTTGCC

Downstream 100 bases:

>100_bases
TCCTGCACCGCTGATCGGCCGTGTCGCGCACGCGCGTCGTCACACCGAGCCTGGCCGTCGCCGGCCAGGCTCGGCTGTCC
AGCCTGCCCGGTGTCGGCCC

Product: translation initiation inhibitor

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYIT
DLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE

Sequences:

>Translated_126_residues
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYIT
DLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE
>Mature_125_residues
SQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYITD
LGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=39.5161290322581, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=50.3937007874016, Blast_Score=127, Evalue=2e-31,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=46.4566929133858, Blast_Score=119, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=45.9016393442623, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=45.9016393442623, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=45.9016393442623, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=37.5, Blast_Score=91, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=87, Evalue=7e-19,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=40.1639344262295, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13180; Mature: 13049

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKA
CCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHH
VAEAAGGSLDKIVRLGLYITDLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEE
AVMVIE
EEEEEC
>Mature Secondary Structure 
SQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKA
CCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHH
VAEAAGGSLDKIVRLGLYITDLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEE
AVMVIE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]