Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is recG [H]
Identifier: 21244116
GI number: 21244116
Start: 3997178
End: 3999331
Strand: Reverse
Name: recG [H]
Synonym: XAC3391
Alternate gene names: 21244116
Gene position: 3999331-3997178 (Counterclockwise)
Preceding gene: 21244117
Following gene: 21244115
Centisome position: 77.27
GC content: 67.04
Gene sequence:
>2154_bases GTGTCGCGCACGCGCGTCGTCACACCGAGCCTGGCCGTCGCCGGCCAGGCTCGGCTGTCCAGCCTGCCCGGTGTCGGCCC GAAAGTGGCCGACAGGTTCGCTGCGCGCGGCATCCTGAGCGTGCAGGACCTGTGGCTGCATCTGCCGCTGCGTTACGAAG ACCGCACGCGCTTGACCACCATCGCGCAGCTGCAAGGTGGCGTGCCGGCCCAGATCGAAGGGCGTGTGGACGCGGTGGAA CGTGGCTTCCGTTTCCGGCCGGTGCTGCGCGTGGCAGTGTCCGACGCGTCGTATGGCACGCTGGTGCTGCGCTTCTTTCA TTTCCGCGCCGCACAGGTGGCGCAGTTCGCCGTCGGCACACGTGTGCGGGTGTTCGGCACACCCAAGCCCGGCCAGCACG GCTGGGAGATCGTGCACCCCAGTTACCGCGTGCTCGCGCCGGACGAAGATGCCGGGTTGGGCGACAGTCTGGATCCGGTG TATCCGGTGCTCGAAGGCGTTGGCCCGGCGACGTTGCGCAAGCTCATCGGTCAGGCGCTGGAGCGTCTGCCGCCCGAAAG TGCGCTGGAATTGTTGCCACCGCATTGGCTGCAGGACGAGCGACTGCCCTCATTGCGCGCGGCGTTGCTCACCATGCATC GCCCGCCGGTCGGTACTGATCCACAGCAACTGCTCGCCGGAGGCCACCCGGCCCAGCAGCGCCTGGCGATCGAGGAATTG CTGGCACACCAACTCAGCCTGCGCCGGCAACGCATCGCATTGCAACGTCTGCACGCGCCCAGCCTGCCCGGCAACGGCAC ATTGGTGCAGCAATTGCGCAAGGCGCTGCCGTTCCAGCTGACCGGTGCGCAACAACGGGTGTTCGAGCAGATTGCGCATG ACCTTGCGCAGCCCTCGCCGATGCTTCGGCTGGTACAGGGCGATGTCGGCAGCGGCAAGACCGTGGTGGCCGCACTGGCG GCAATGTTGGCGGTGGAGCAGGGCAAACAGGTCGCACTTGCCGCGCCCACCGAATTGCTGGCCGAGCAGCACCTCACCAA TCTGCGTGGCTGGTTGGAACCCTTGGGCATCCGCATCGTCTGGCTGGCTGGCAAGGTCACCGGCAAGGCGCGCGCTGCAG CGATGGCCGAGGTCGCCTCCGGTCAGGCGCAGGTCGTGGTCGGCACGCATGCGTTGATGCAGGAAGCAGTGGTCTTCCAC GATCTGGCGTTGGCCATCATCGACGAGCAACACCGCTTCGGCGTGCATCAGCGCCTTGCGCTGCGCGACAAGGGGGCGGC GGCGGGCAGCGTGCCGCATCAACTGGTGATGACCGCCACGCCCATCCCGCGCACATTGGCGATGTCTGCTTACGCAGATC TGGATGTTTCGGCCATCGACGAATTGCCGCCTGGCCGCACGCCGGTGCAGACGATCGTGCTGAGCGCGGAGCGCCGGCCC GAGTTGGTCGAACGTATCCGCGCCGCCTGTGCCGAAGGGCGGCAGGCGTATTGGGTGTGCACGCTGATCGAAGAAAGCGA AGAGCCCGGGAAAGGCGCGCAAGGCCAGCAAGGCGGCCCGCCACGCATCGAAGCGCAGGCGGCCGAAGTCACCTTCGAGA CCTTGTCGGCGCAGTTGCCGGGCGTGCGGGTGGCGCTGGTGCACGGCCGCATGAAGCCGGCCGAGAAGCAGAAGGCCATG CTGGATTTCAAGCAAGGCCGTAGCGACCTGTTGGTGGCCACCACCGTGATCGAAGTCGGCGTGGACGTGCCCAATGCATC GTTGATGATCATCGAAAATGCCGAGCGGCTTGGCCTGGCCCAGTTGCACCAGTTGCGCGGCCGGGTCGGTCGCGGTGCGG CCGCTTCCAGTTGCGTGTTGCTGTACCAGGCGCCGTTGTCGATGATGGCGCGTCAGCGTCTGGAGACCATGCGCCAGACC AACGACGGTTTCGTGATCGCGGAGAAGGATCTCCAATTGCGTGGCCCGGGCGAATTGCTGGGCACCCGGCAAACCGGTCT GGCCAGTTTCCGCATCGCCGATCTGGCGCGCGATGCAGGGCTGTTGCCGCGCGTGCAGTTACTGGCCGAGCGGCTGCTGG ACGAAGCGCCAGACATTGCCGACCGCGTGGTCGAACGCTGGATCGGCGGCGCGGTGCGTTACGCGGCCGCGTGA
Upstream 100 bases:
>100_bases CGGCGCGTTCGACCATAGAAGTCTCCGGCCTGCCCAAGGGTGCCGGCTTCGAGGTCGATGCAGTGATGGTGATCGAGTGA TCCTGCACCGCTGATCGGCC
Downstream 100 bases:
>100_bases GCGGCGGGAATCGGATTGGGGAATCTTAAAAGCAAAGGCTGCTGCCCCTGTGCAACCTGGGCGTTCGCGTGACCGGCCGA TCCTTGCGAAGATGCGGCAA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 717; Mature: 716
Protein sequence:
>717_residues MSRTRVVTPSLAVAGQARLSSLPGVGPKVADRFAARGILSVQDLWLHLPLRYEDRTRLTTIAQLQGGVPAQIEGRVDAVE RGFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQFAVGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPV YPVLEGVGPATLRKLIGQALERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSPMLRLVQGDVGSGKTVVAALA AMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFH DLALAIIDEQHRFGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLPGVRVALVHGRMKPAEKQKAM LDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQT NDGFVIAEKDLQLRGPGELLGTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIADRVVERWIGGAVRYAAA
Sequences:
>Translated_717_residues MSRTRVVTPSLAVAGQARLSSLPGVGPKVADRFAARGILSVQDLWLHLPLRYEDRTRLTTIAQLQGGVPAQIEGRVDAVE RGFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQFAVGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPV YPVLEGVGPATLRKLIGQALERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSPMLRLVQGDVGSGKTVVAALA AMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFH DLALAIIDEQHRFGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLPGVRVALVHGRMKPAEKQKAM LDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQT NDGFVIAEKDLQLRGPGELLGTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIADRVVERWIGGAVRYAAA >Mature_716_residues SRTRVVTPSLAVAGQARLSSLPGVGPKVADRFAARGILSVQDLWLHLPLRYEDRTRLTTIAQLQGGVPAQIEGRVDAVER GFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQFAVGTRVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVY PVLEGVGPATLRKLIGQALERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEELL AHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSPMLRLVQGDVGSGKTVVAALAA MLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIVWLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHD LALAIIDEQHRFGVHQRLALRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRPE LVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLPGVRVALVHGRMKPAEKQKAML DFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTN DGFVIAEKDLQLRGPGELLGTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIADRVVERWIGGAVRYAAA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=700, Percent_Identity=58, Blast_Score=738, Evalue=0.0, Organism=Escherichia coli, GI1787357, Length=402, Percent_Identity=38.5572139303483, Blast_Score=248, Evalue=9e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77594; Mature: 77463
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTRVVTPSLAVAGQARLSSLPGVGPKVADRFAARGILSVQDLWLHLPLRYEDRTRLTT CCCCEECCCCHHHHCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHH IAQLQGGVPAQIEGRVDAVERGFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQFAVGT HHHHCCCCCCEECCCHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC RVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL EEEEEECCCCCCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH ERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL HHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSP HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHCCCCH MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIV HHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA EEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHH LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP HHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHHEECCCCCH ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLP HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCEEEEEECCHHCCHH QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELL HHHHHHHHCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHH GTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIADRVVERWIGGAVRYAAA CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure SRTRVVTPSLAVAGQARLSSLPGVGPKVADRFAARGILSVQDLWLHLPLRYEDRTRLTT CCCEECCCCHHHHCHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHH IAQLQGGVPAQIEGRVDAVERGFRFRPVLRVAVSDASYGTLVLRFFHFRAAQVAQFAVGT HHHHCCCCCCEECCCHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC RVRVFGTPKPGQHGWEIVHPSYRVLAPDEDAGLGDSLDPVYPVLEGVGPATLRKLIGQAL EEEEEECCCCCCCCCEEECCCEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH ERLPPESALELLPPHWLQDERLPSLRAALLTMHRPPVGTDPQQLLAGGHPAQQRLAIEEL HHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH LAHQLSLRRQRIALQRLHAPSLPGNGTLVQQLRKALPFQLTGAQQRVFEQIAHDLAQPSP HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEECCHHHHHHHHHHHHHCCCCH MLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLTNLRGWLEPLGIRIV HHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEE WLAGKVTGKARAAAMAEVASGQAQVVVGTHALMQEAVVFHDLALAIIDEQHRFGVHQRLA EEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHH LRDKGAAAGSVPHQLVMTATPIPRTLAMSAYADLDVSAIDELPPGRTPVQTIVLSAERRP HHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHHEECCCCCH ELVERIRAACAEGRQAYWVCTLIEESEEPGKGAQGQQGGPPRIEAQAAEVTFETLSAQLP HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC GVRVALVHGRMKPAEKQKAMLDFKQGRSDLLVATTVIEVGVDVPNASLMIIENAERLGLA CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCEEEEEECCHHCCHH QLHQLRGRVGRGAAASSCVLLYQAPLSMMARQRLETMRQTNDGFVIAEKDLQLRGPGELL HHHHHHHHCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHHHH GTRQTGLASFRIADLARDAGLLPRVQLLAERLLDEAPDIADRVVERWIGGAVRYAAA CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]