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The map label for this gene is rpoE [H]

Identifier: 21242431

GI number: 21242431

Start: 1939735

End: 1940316

Strand: Reverse

Name: rpoE [H]

Synonym: XAC1682

Alternate gene names: 21242431

Gene position: 1940316-1939735 (Counterclockwise)

Preceding gene: 21242432

Following gene: 21242430

Centisome position: 37.49

GC content: 65.12

Gene sequence:

>582_bases
ATGAATGATACCGACACCCTGGGCGATGCCACCGATCGCATGCTGTTGCGCCGCATGGCCGGGGGCGATCGCGACGCGCT
GGCCAGCATGTACCACAGCTATCACGGCCGGCTGTGCCGCTTCCTGTCGCGGCTGACCCGCCGCCCGGACATTATCGAAG
AGGCCATCAACGATTGCTTCTGGATCGCCTGGCAAAAGGCCGGCGACTTCCGCGGCGACTCGCAGGTGTCCACCTGGATC
ATGGGCATCGCCTACCGCTGCGGACTCAAATGCCTGCGCCAGCATGACGGCGAAGCCATCGACGACACTGCCCTGGTGGA
AGACCACGCCCCCAGCGCCGACGACAACGACGACCGCGAACTGCGCGACTGGCTGGACAAGGGCATGGAACGGTTGTCGC
CGGACCAGCGCCTGGTGGTCGAACTGGTCTACGGCGTCGGCCACAAGCTCGAAGAAGTGGCCGACATCATGCAGTGCCCG
GTCGGCACCATCAAAGCCCGGCTGTTCCACGCCCGGGTCAAATTACGCAATGTGCTGCCCGGCCTGGCCGGCGGCGCCCC
TTACACGGAGACCATGCAATGA

Upstream 100 bases:

>100_bases
CATGCCGTGGCTGGGCACGGTCGCCAGAACCTTCTGATCCACACGCAACCTTTTGCCTGCCAGCGCGCACTGACGTGGGT
GACCCGCCATGCCTGCACCG

Downstream 100 bases:

>100_bases
AGACGTTTTTCATCGCGCCTGGCAAGGAATGCTCGCACGCCTGGGAATTGATGCCGGCGGTGCTGCTGGACAGTGCCACC
GAGGAAGAAAACACCTGGCT

Product: RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNDTDTLGDATDRMLLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTALVEDHAPSADDNDDRELRDWLDKGMERLSPDQRLVVELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ

Sequences:

>Translated_193_residues
MNDTDTLGDATDRMLLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTALVEDHAPSADDNDDRELRDWLDKGMERLSPDQRLVVELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ
>Mature_193_residues
MNDTDTLGDATDRMLLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDSQVSTWI
MGIAYRCGLKCLRQHDGEAIDDTALVEDHAPSADDNDDRELRDWLDKGMERLSPDQRLVVELVYGVGHKLEEVADIMQCP
VGTIKARLFHARVKLRNVLPGLAGGAPYTETMQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=182, Percent_Identity=30.2197802197802, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21837; Mature: 21837

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTDTLGDATDRMLLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCF
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WIAWQKAGDFRGDSQVSTWIMGIAYRCGLKCLRQHDGEAIDDTALVEDHAPSADDNDDRE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHH
LRDWLDKGMERLSPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLP
HHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GLAGGAPYTETMQ
CCCCCCCCHHCCC
>Mature Secondary Structure
MNDTDTLGDATDRMLLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCF
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WIAWQKAGDFRGDSQVSTWIMGIAYRCGLKCLRQHDGEAIDDTALVEDHAPSADDNDDRE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCHHH
LRDWLDKGMERLSPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLP
HHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
GLAGGAPYTETMQ
CCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]