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The map label for this gene is ydgM [H]

Identifier: 21242137

GI number: 21242137

Start: 1590982

End: 1591488

Strand: Reverse

Name: ydgM [H]

Synonym: XAC1384

Alternate gene names: 21242137

Gene position: 1591488-1590982 (Counterclockwise)

Preceding gene: 21242138

Following gene: 21242136

Centisome position: 30.75

GC content: 66.07

Gene sequence:

>507_bases
ATGGCGACAGCCGCGAAGACAAACCGATGCTCGCGCTTGCGCAACAACGCTGGTATCGCGGCAATCTGCTGCATTGAGAT
GACCGCGATGCCTGCCCCTGCACCCGATCTGGTCGAACGCCTCGACCGCCTGCTGCCGCAGACCCAATGCGGGCAATGCG
GGTATGACGGCTGTCGTCCGTATGCGCAGGCGATGGCAGATGGCCTGGCGACGATCAATCACTGCCCGCCCGGCGGCGAT
GCCGGGGCACGCGCCTTGGCGCAGGTGCTGGGCGTGCCGCCACGTCCCTACGATCGCAGTCGCGGCGCACACAAACTGCC
GCAGGTGGCCTGGATCGTGGAAGCCGATTGCATCGGCTGCACCAAGTGCATCCAGGCCTGCCCCGTGGATGCCATCGTCG
GCGGCGCCAAGCACATGCACACGGTGATCGCGCCGTTGTGCACGGGTTGCGAACTGTGTCTGCCGGCCTGCCCGGTGGAT
TGCATCGAGTTGCATCCAACCGCCTGA

Upstream 100 bases:

>100_bases
GCGCTGAGCGGGCGCTACGCCGACGGCGATTGCGGGCCGCACAAGGTTGCGCGGATTCGCAGTCAATACGAGCTGCCTCG
GTACGACTGCGTGCACGCCT

Downstream 100 bases:

>100_bases
GCGCGACGCTCGGCGCGATGCCGCGTCCAGCCGATGTCTGCGTGGTCATGGGTTGGCGTGCATTCCGGCATGGTCATCTG
CTGCGCAAGGCAGATTCGAG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MATAAKTNRCSRLRNNAGIAAICCIEMTAMPAPAPDLVERLDRLLPQTQCGQCGYDGCRPYAQAMADGLATINHCPPGGD
AGARALAQVLGVPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVD
CIELHPTA

Sequences:

>Translated_168_residues
MATAAKTNRCSRLRNNAGIAAICCIEMTAMPAPAPDLVERLDRLLPQTQCGQCGYDGCRPYAQAMADGLATINHCPPGGD
AGARALAQVLGVPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVD
CIELHPTA
>Mature_167_residues
ATAAKTNRCSRLRNNAGIAAICCIEMTAMPAPAPDLVERLDRLLPQTQCGQCGYDGCRPYAQAMADGLATINHCPPGGDA
GARALAQVLGVPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDC
IELHPTA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=133, Percent_Identity=54.8872180451128, Blast_Score=146, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 17575; Mature: 17443

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
12.5 %Cys+Met (Translated Protein)
9.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
12.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAAKTNRCSRLRNNAGIAAICCIEMTAMPAPAPDLVERLDRLLPQTQCGQCGYDGCRP
CCCCCHHHHHHHHHCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH
YAQAMADGLATINHCPPGGDAGARALAQVLGVPPRPYDRSRGAHKLPQVAWIVEADCIGC
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHH
TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIELHPTA
HHHHHHCCHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCHHCCCCCC
>Mature Secondary Structure 
ATAAKTNRCSRLRNNAGIAAICCIEMTAMPAPAPDLVERLDRLLPQTQCGQCGYDGCRP
CCCCHHHHHHHHHCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH
YAQAMADGLATINHCPPGGDAGARALAQVLGVPPRPYDRSRGAHKLPQVAWIVEADCIGC
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHH
TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIELHPTA
HHHHHHCCHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA