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The map label for this gene is sodC2 [H]

Identifier: 21240984

GI number: 21240984

Start: 258282

End: 258779

Strand: Direct

Name: sodC2 [H]

Synonym: XAC0210

Alternate gene names: 21240984

Gene position: 258282-258779 (Clockwise)

Preceding gene: 21240983

Following gene: 21240987

Centisome position: 4.99

GC content: 65.66

Gene sequence:

>498_bases
ATGGTCACCGAAGCAGCAGCCACCACCACCGCAACCGCCGAGCTCAAGCCGACCAAGGGTAATGACGTCAAAGGCACGGT
GACGTTCAAGACCGTCGACGGTGCGCTGCGTGTCACCGGCCAGCTCAGCGGCCTCAAGCCCAATACCGAGCACGGCTTCC
ACATCCACGAGAAGGGCGATTGCAGCGCACCGGACGGCAGCAGCGCCGGCGGTCACTTCAACCCGTCCCAGTCCGATCAC
GGCAATATCAGCGCCGACCCGCACCACGGTGGCGACATGCCCAACATCACCGCCGACGCGCAGGGTAACGCCAGCATCGA
CGGCCCGGTCTCCAGCAACGTCAACCTCGGCAAGGCCGACCAGTTCGATATCGCCGGCCACGCGGTGATCGTGCATGCCG
ATGCAGACGACTACAAAACCCAGCCCACCGGCAACGCGGGCGGCCGCCTGGCCTGCGGCGTGATCACCACTGATAACGCG
CAGGCGCCGGCCAAGTAA

Upstream 100 bases:

>100_bases
CGCGTGCAAGCGCGACGAACCGGCGCCGGCCGAGCCGGCACCTGCACCGCAGGCCAGCACGCCGGCCGAAGCGGCGCACG
GTGGCGAACACGCCGCTTCC

Downstream 100 bases:

>100_bases
GTGCTCTGCGACCGTTGTCGATGCACGGCAACGGTTGAATAACGACGAACGCTGTGGACGATGTCGGCCGACGTGCCGAT
GGATGTGCAGGCAGCGCGGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNISADPHHGGDMPNITADAQGNASIDGPVSSNVNLGKADQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAPAK

Sequences:

>Translated_165_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNISADPHHGGDMPNITADAQGNASIDGPVSSNVNLGKADQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAPAK
>Mature_165_residues
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGDCSAPDGSSAGGHFNPSQSDH
GNISADPHHGGDMPNITADAQGNASIDGPVSSNVNLGKADQFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNA
QAPAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=141, Percent_Identity=40.4255319148936, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI4826665, Length=140, Percent_Identity=32.8571428571429, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787934, Length=142, Percent_Identity=33.0985915492958, Blast_Score=63, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17554806, Length=142, Percent_Identity=39.4366197183099, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71981876, Length=161, Percent_Identity=35.4037267080745, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71981879, Length=148, Percent_Identity=37.1621621621622, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17537871, Length=149, Percent_Identity=38.9261744966443, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6322564, Length=167, Percent_Identity=37.125748502994, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007680, Length=154, Percent_Identity=40.2597402597403, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI85725006, Length=142, Percent_Identity=42.2535211267606, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI45551081, Length=142, Percent_Identity=42.2535211267606, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24652737, Length=142, Percent_Identity=42.2535211267606, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI17136496, Length=145, Percent_Identity=39.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281363087, Length=115, Percent_Identity=42.6086956521739, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24652342, Length=115, Percent_Identity=42.6086956521739, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 16678; Mature: 16678

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGD
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEEECCCC
CSAPDGSSAGGHFNPSQSDHGNISADPHHGGDMPNITADAQGNASIDGPVSSNVNLGKAD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCC
QFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNAQAPAK
CEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MVTEAAATTTATAELKPTKGNDVKGTVTFKTVDGALRVTGQLSGLKPNTEHGFHIHEKGD
CCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEEECCCC
CSAPDGSSAGGHFNPSQSDHGNISADPHHGGDMPNITADAQGNASIDGPVSSNVNLGKAD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCC
QFDIAGHAVIVHADADDYKTQPTGNAGGRLACGVITTDNAQAPAK
CEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]