| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cdhD2 [H]
Identifier: 21226790
GI number: 21226790
Start: 825461
End: 826771
Strand: Direct
Name: cdhD2 [H]
Synonym: MM_0688
Alternate gene names: 21226790
Gene position: 825461-826771 (Clockwise)
Preceding gene: 21226789
Following gene: 21226791
Centisome position: 20.15
GC content: 50.11
Gene sequence:
>1311_bases ATGGCAAAGAAAATGAAGTTATCTGATATTACAAACATGTTCGCGGGCATGGATGTAGAAGCCCTCGAAGGTGTTACTAT AGAAGGGGACATTGAGATTGATCTCGGTGGACTCGGAGGCGGCTTTGACCCCATGCTTGCCGCTGCCCTGGGGCAGGAGA GCGCAGTACTCGCCCAGCACTTCGCAAGAATTGCAGGCATGTTCGGGTACCCGGTAGGCATAGGTGCACCAGCAGCTCCG GCAATTTCACCTGCTCTGGCAGCACCCAAACTCAAGGATCTCATACCTGCAAAGTTTGATGTTGCCAATATTGCAGAATG GGCAACTCAGATTCAGGAAGTACCAATCGGAAACACATCAGCAGACGGTGGAAGCCGTGGAAAGAGAGTGCTGGTAGGTG GAGAAAAAGCCCTGCCGTTCTTCCCTGACGCGCCAATGCCCAACAGGAACCAGGTAACAATTGACGTGTTCGATATGAGA ATTGGGCTTGCAAAAGCTGTCAAAGAAAATTATGATGAGGTCATGGACAGCCCGGGAGAATGGGCAAAGAAGAACGTTGA GAAGTTCAACGCAGATATGATTACCATTCACCTGATTTCAACTGACCCGCTTGTAAAGGACACACCTCCAAAAGAAGCAG CAAAGACAGTAGAAGAAGTTCTCCAGGCTGTTGATGTCCCAATAGCAATCGGTGGATCAGGTAACCCGCAGAAAGACCCC GAAGTCCTCGCAAGAGCAGCAGAAGTTGCAGAAGGAGAACGATGCCTGCTTGCATCTGCAAGCCTGAACCTGGACTATGC AGCAATTGCAGAAGCAGCACTCAAATATGACCACGATGTCCTTTCCTGGACTCAGCTGGACATGAACGCCCAGAAGGAGC TTAACAGGAAACTCATGAAGCAGTGCAATGTCCCAAGAGACAGGATCATAATGGACCCGACCACTGCAGCCCTCGGATAT GGTCTCGACTACGCTTACACAAACATGGAGCGTATCAGACTTGCAGCACTTATGGGTGACGATGAACTCACATTCCCGAT GTCATCAGGTACAACAAATGCATGGGGTGCCCGTGAGTCATGGATGGTGGGATCACCGCTTAAAGAAGACTCTGATTGGG GACCAAGGGAATACAGAGGTCCTATATGGGAGATTGTCACAGGTCTGTCACTTGCAATTGCAGGAAACGACCTATTCATG ATGATGCACCCAACATCGGTTGCTGTCCTGAAGCAGATTACCCAGACGCTATTCGGTACCATAGACACAGAGCAGGTGGA TATTGCAAACTGGATCGGAGCGGAGGTGTGA
Upstream 100 bases:
>100_bases GTATTATCAGGGCAAAAAATATGGAAACACATCCTGTATTATATCCTTTATTATAAGCCACTCATAAAAACGGATAAATT ACGGAAACGGTGAGGTTTAC
Downstream 100 bases:
>100_bases AAAATGAAGATTAACAGCCCATTAGAAGCGTACAAGTACCTGCCTCAGACCAACTGTGGAGAATGTGGTCAGCCTACATG TATGGCATTTGCCTCCACGC
Product: acetyl-CoA decarbonylase/synthase complex subunit delta
Products: CO2; AH2
Alternate protein names: ACDS complex subunit delta 2; Corrinoid/iron-sulfur component small subunit 2 [H]
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MAKKMKLSDITNMFAGMDVEALEGVTIEGDIEIDLGGLGGGFDPMLAAALGQESAVLAQHFARIAGMFGYPVGIGAPAAP AISPALAAPKLKDLIPAKFDVANIAEWATQIQEVPIGNTSADGGSRGKRVLVGGEKALPFFPDAPMPNRNQVTIDVFDMR IGLAKAVKENYDEVMDSPGEWAKKNVEKFNADMITIHLISTDPLVKDTPPKEAAKTVEEVLQAVDVPIAIGGSGNPQKDP EVLARAAEVAEGERCLLASASLNLDYAAIAEAALKYDHDVLSWTQLDMNAQKELNRKLMKQCNVPRDRIIMDPTTAALGY GLDYAYTNMERIRLAALMGDDELTFPMSSGTTNAWGARESWMVGSPLKEDSDWGPREYRGPIWEIVTGLSLAIAGNDLFM MMHPTSVAVLKQITQTLFGTIDTEQVDIANWIGAEV
Sequences:
>Translated_436_residues MAKKMKLSDITNMFAGMDVEALEGVTIEGDIEIDLGGLGGGFDPMLAAALGQESAVLAQHFARIAGMFGYPVGIGAPAAP AISPALAAPKLKDLIPAKFDVANIAEWATQIQEVPIGNTSADGGSRGKRVLVGGEKALPFFPDAPMPNRNQVTIDVFDMR IGLAKAVKENYDEVMDSPGEWAKKNVEKFNADMITIHLISTDPLVKDTPPKEAAKTVEEVLQAVDVPIAIGGSGNPQKDP EVLARAAEVAEGERCLLASASLNLDYAAIAEAALKYDHDVLSWTQLDMNAQKELNRKLMKQCNVPRDRIIMDPTTAALGY GLDYAYTNMERIRLAALMGDDELTFPMSSGTTNAWGARESWMVGSPLKEDSDWGPREYRGPIWEIVTGLSLAIAGNDLFM MMHPTSVAVLKQITQTLFGTIDTEQVDIANWIGAEV >Mature_435_residues AKKMKLSDITNMFAGMDVEALEGVTIEGDIEIDLGGLGGGFDPMLAAALGQESAVLAQHFARIAGMFGYPVGIGAPAAPA ISPALAAPKLKDLIPAKFDVANIAEWATQIQEVPIGNTSADGGSRGKRVLVGGEKALPFFPDAPMPNRNQVTIDVFDMRI GLAKAVKENYDEVMDSPGEWAKKNVEKFNADMITIHLISTDPLVKDTPPKEAAKTVEEVLQAVDVPIAIGGSGNPQKDPE VLARAAEVAEGERCLLASASLNLDYAAIAEAALKYDHDVLSWTQLDMNAQKELNRKLMKQCNVPRDRIIMDPTTAALGYG LDYAYTNMERIRLAALMGDDELTFPMSSGTTNAWGARESWMVGSPLKEDSDWGPREYRGPIWEIVTGLSLAIAGNDLFMM MHPTSVAVLKQITQTLFGTIDTEQVDIANWIGAEV
Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. Probably maintains the overall quaternary structure of the ACDS complex [H]
COG id: COG2069
COG function: function code C; CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdhD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016041 - InterPro: IPR013785 - InterPro: IPR004486 - InterPro: IPR011005 [H]
Pfam domain/function: PF03599 CdhD [H]
EC number: 1.2.99.2
Molecular weight: Translated: 46934; Mature: 46803
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKMKLSDITNMFAGMDVEALEGVTIEGDIEIDLGGLGGGFDPMLAAALGQESAVLAQH CCCCCHHHHHHHHHHCCCHHHHCCEEEECEEEEEECCCCCCHHHHHHHHHCCCHHHHHHH FARIAGMFGYPVGIGAPAAPAISPALAAPKLKDLIPAKFDVANIAEWATQIQEVPIGNTS HHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC ADGGSRGKRVLVGGEKALPFFPDAPMPNRNQVTIDVFDMRIGLAKAVKENYDEVMDSPGE CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCH WAKKNVEKFNADMITIHLISTDPLVKDTPPKEAAKTVEEVLQAVDVPIAIGGSGNPQKDP HHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCH EVLARAAEVAEGERCLLASASLNLDYAAIAEAALKYDHDVLSWTQLDMNAQKELNRKLMK HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHH QCNVPRDRIIMDPTTAALGYGLDYAYTNMERIRLAALMGDDELTFPMSSGTTNAWGARES HCCCCHHCEEECCCHHHHHCCCHHHHCCHHHHEEEEEECCCCEEEECCCCCCCCCCCCCC WMVGSPLKEDSDWGPREYRGPIWEIVTGLSLAIAGNDLFMMMHPTSVAVLKQITQTLFGT CCCCCCCCCCCCCCCHHHCCHHHHHHHCCEEEEECCEEEEEECCHHHHHHHHHHHHHHCC IDTEQVDIANWIGAEV CCCCHHHHHHHHCCCC >Mature Secondary Structure AKKMKLSDITNMFAGMDVEALEGVTIEGDIEIDLGGLGGGFDPMLAAALGQESAVLAQH CCCCHHHHHHHHHHCCCHHHHCCEEEECEEEEEECCCCCCHHHHHHHHHCCCHHHHHHH FARIAGMFGYPVGIGAPAAPAISPALAAPKLKDLIPAKFDVANIAEWATQIQEVPIGNTS HHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC ADGGSRGKRVLVGGEKALPFFPDAPMPNRNQVTIDVFDMRIGLAKAVKENYDEVMDSPGE CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCH WAKKNVEKFNADMITIHLISTDPLVKDTPPKEAAKTVEEVLQAVDVPIAIGGSGNPQKDP HHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCH EVLARAAEVAEGERCLLASASLNLDYAAIAEAALKYDHDVLSWTQLDMNAQKELNRKLMK HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHH QCNVPRDRIIMDPTTAALGYGLDYAYTNMERIRLAALMGDDELTFPMSSGTTNAWGARES HCCCCHHCEEECCCHHHHHCCCHHHHCCHHHHEEEEEECCCCEEEECCCCCCCCCCCCCC WMVGSPLKEDSDWGPREYRGPIWEIVTGLSLAIAGNDLFMMMHPTSVAVLKQITQTLFGT CCCCCCCCCCCCCCCHHHCCHHHHHHHCCEEEEECCEEEEEECCHHHHHHHHHHHHHHCC IDTEQVDIANWIGAEV CCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CO; H2O; A
Specific reaction: CO + H2O + A = CO2 + AH2
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12464601 [H]