| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226781
Identifier: 21226781
GI number: 21226781
Start: 815389
End: 816366
Strand: Direct
Name: 21226781
Synonym: MM_0679
Alternate gene names: NA
Gene position: 815389-816366 (Clockwise)
Preceding gene: 21226780
Following gene: 21226786
Centisome position: 19.91
GC content: 46.93
Gene sequence:
>978_bases TTGGCATTCATAGGAGTTGACCACGGAACAACCGCAATGCGTTTTGCACTTATCGAAGGTGAAAAGGTTCTGACCTTTGA ACTCGGAAGGTCTGAAGCTGCTGCAATGTCAGAAAAAGAAATTCTGGAATCTATTGAAAAAGAGTTCGAAGTCAAAGTTA AAGATATAGATTTGATTGCTTTGACTTACTCGATGGGAGACGGCTTTTCCGAGATTAAAGACGTAAAAAAGATTGAAGGG CGGGGGCTTCAGAGTACGGAAGGCGCGGGAAAAAAGACCGGAGGAGGCACACGGGTCTTTGATGCTGTGAAGAATTCCGG CATTCCGGCAATAGCGATTCCCGGCCTGCACACGAGAAGTAAAGTAGACCCGAGAATGAAGGTGTTTTCCCACCTTACAA GCCCGGAAAAGCTGGGGATTGCATATCATATCCGGTGCATGGGCTACAAAGACTTTGTTGTTTCAGATATCAGCTCCAAT ACTGTAACTCTTGCGGTTGCCTCTGGAAAAGTTATCGGGGCAATCGATGCCTGTATTTTCGCTCCCGGAGTTCACCACGG ACCTCTTGACCTTGAAGCTATCAGAAATGTTGATGACGGGCTAAGGACAGCGAACCAGGCATTTATGGAAGCAGGAGCTC TGAAGATGACTCCTTATAAAGACAGGGGAGAACTTCTCAATGCAGCCGAAAATGGAGAAGAGCCCGCACTGCTCGCACTG GATACCATATCACTTTTTGCAGCTATGGAAATAGTTTCAATGCAGCTTCTCCTGAAAGAATACGGAGTTACGGGAGCTGC CTTTCTTGCAGGCTCTGTAGGAGAAGTGGAATATGTGCAGAAAAAAATCAGCAGGCACCTTGGCCAGGAATGCCTCAGCC TTGGGAAATGGCATGCTGCAATTGGCTGTGCCGGGATAGCAAGAGATGTTTTTGCCGGAGAAAACCATATTCTCGGAATA GACGTGGATTATCCTTAA
Upstream 100 bases:
>100_bases TGGTGACAACAGTTGGTACCGCTGAAGAGGGGGACAGAATAATGAATGAACTGAATGAGATACTAAAAAATGCCCTCTGA GGCTTTACAGGAGAGATCAC
Downstream 100 bases:
>100_bases AAAATGAGAGAGTATCCTGAAGAGAAAAATCAGACCTCTAATCAGGTCTTTTCCATAGATTCTCCATACTCATCTTCGGG ATATTCCTCGTGGTATTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MAFIGVDHGTTAMRFALIEGEKVLTFELGRSEAAAMSEKEILESIEKEFEVKVKDIDLIALTYSMGDGFSEIKDVKKIEG RGLQSTEGAGKKTGGGTRVFDAVKNSGIPAIAIPGLHTRSKVDPRMKVFSHLTSPEKLGIAYHIRCMGYKDFVVSDISSN TVTLAVASGKVIGAIDACIFAPGVHHGPLDLEAIRNVDDGLRTANQAFMEAGALKMTPYKDRGELLNAAENGEEPALLAL DTISLFAAMEIVSMQLLLKEYGVTGAAFLAGSVGEVEYVQKKISRHLGQECLSLGKWHAAIGCAGIARDVFAGENHILGI DVDYP
Sequences:
>Translated_325_residues MAFIGVDHGTTAMRFALIEGEKVLTFELGRSEAAAMSEKEILESIEKEFEVKVKDIDLIALTYSMGDGFSEIKDVKKIEG RGLQSTEGAGKKTGGGTRVFDAVKNSGIPAIAIPGLHTRSKVDPRMKVFSHLTSPEKLGIAYHIRCMGYKDFVVSDISSN TVTLAVASGKVIGAIDACIFAPGVHHGPLDLEAIRNVDDGLRTANQAFMEAGALKMTPYKDRGELLNAAENGEEPALLAL DTISLFAAMEIVSMQLLLKEYGVTGAAFLAGSVGEVEYVQKKISRHLGQECLSLGKWHAAIGCAGIARDVFAGENHILGI DVDYP >Mature_324_residues AFIGVDHGTTAMRFALIEGEKVLTFELGRSEAAAMSEKEILESIEKEFEVKVKDIDLIALTYSMGDGFSEIKDVKKIEGR GLQSTEGAGKKTGGGTRVFDAVKNSGIPAIAIPGLHTRSKVDPRMKVFSHLTSPEKLGIAYHIRCMGYKDFVVSDISSNT VTLAVASGKVIGAIDACIFAPGVHHGPLDLEAIRNVDDGLRTANQAFMEAGALKMTPYKDRGELLNAAENGEEPALLALD TISLFAAMEIVSMQLLLKEYGVTGAAFLAGSVGEVEYVQKKISRHLGQECLSLGKWHAAIGCAGIARDVFAGENHILGID VDYP
Specific function: Unknown
COG id: COG4020
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0285 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y679_METMA (Q8PZ16)
Other databases:
- EMBL: AE008384 - RefSeq: NP_632703.1 - GeneID: 1479021 - GenomeReviews: AE008384_GR - KEGG: mma:MM_0679 - NMPDR: fig|192952.1.peg.679 - HOGENOM: HBG539696 - OMA: DHGTSGI - ProtClustDB: PRK00976 - BioCyc: MMAZ192952:MM0679-MONOMER - HAMAP: MF_01087 - InterPro: IPR016735 - PIRSF: PIRSF018783 - TIGRFAMs: TIGR03281
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34772; Mature: 34641
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFIGVDHGTTAMRFALIEGEKVLTFELGRSEAAAMSEKEILESIEKEFEVKVKDIDLIA CEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEE LTYSMGDGFSEIKDVKKIEGRGLQSTEGAGKKTGGGTRVFDAVKNSGIPAIAIPGLHTRS EEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCC KVDPRMKVFSHLTSPEKLGIAYHIRCMGYKDFVVSDISSNTVTLAVASGKVIGAIDACIF CCCHHHHHHHHCCCCHHCCEEEEEEEECCHHHHEECCCCCEEEEEEECCCEEEHHHHHHH APGVHHGPLDLEAIRNVDDGLRTANQAFMEAGALKMTPYKDRGELLNAAENGEEPALLAL CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCEEEEH DTISLFAAMEIVSMQLLLKEYGVTGAAFLAGSVGEVEYVQKKISRHLGQECLSLGKWHAA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH IGCAGIARDVFAGENHILGIDVDYP HHHHHHHHHHHCCCCEEEEEECCCC >Mature Secondary Structure AFIGVDHGTTAMRFALIEGEKVLTFELGRSEAAAMSEKEILESIEKEFEVKVKDIDLIA EEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEE LTYSMGDGFSEIKDVKKIEGRGLQSTEGAGKKTGGGTRVFDAVKNSGIPAIAIPGLHTRS EEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCC KVDPRMKVFSHLTSPEKLGIAYHIRCMGYKDFVVSDISSNTVTLAVASGKVIGAIDACIF CCCHHHHHHHHCCCCHHCCEEEEEEEECCHHHHEECCCCCEEEEEEECCCEEEHHHHHHH APGVHHGPLDLEAIRNVDDGLRTANQAFMEAGALKMTPYKDRGELLNAAENGEEPALLAL CCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCEEEEH DTISLFAAMEIVSMQLLLKEYGVTGAAFLAGSVGEVEYVQKKISRHLGQECLSLGKWHAA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH IGCAGIARDVFAGENHILGIDVDYP HHHHHHHHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824