| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cdhA2
Identifier: 21226786
GI number: 21226786
Start: 819935
End: 822358
Strand: Direct
Name: cdhA2
Synonym: MM_0684
Alternate gene names: 21226786
Gene position: 819935-822358 (Clockwise)
Preceding gene: 21226781
Following gene: 21226787
Centisome position: 20.02
GC content: 51.07
Gene sequence:
>2424_bases ATGAGCAAACTAACTACCGGGAGTTTTTCAATAGAAGATCTTGAATCCGTTCAGATCACTATTAACAACATTGTAGGGGC AGCAAAGGAGGCTGCTGAAGAAAAAGCAAAGGAGCTCGTTAAGGCTGGTCCCACTCTTTTCCCAGGACTTGAGTCCTACA GAGATGACTGGAACTTCAAACTTCTTGACCGCTACGAGCCTGTTGTTACCCCAATGTGTGACCAGTGCTGCTACTGTACC TATGGACCCTGTGACCTTTCAGGGAACAAAAGAGGTGCCTGTGGTATCGACATGATGGGCCACAACGGAAGGGAATTCTT CCTCCGTGTAATTACAGGTACTGCCTGCCACGCAGCCCACGGCCGCCACCTGCTTGATCACCTGATCGAAACCTTCGGAG AAGACTTACCCCTCAACCTTGGGCAGTCAAATGTCCTTACTCCGAACATCACAATCAGCACAGGGCTCAGCCCCAAGAAC CTTGGCGAAGTCAAGCCAGCAATGGAATTCGTTGAAGAACAGCTGACTCAGCTGCTTGCAACCGTCCACGCAGGACAGGA ATCCGCAGAGATCGATTACGACTCAAAAGCCCTCTTCAGCGGTAGCCTGGACCACGTAGGCATGGAAATTTCCGATGTTG TACAGGTTGCAGCCTACGACTTCCCGAAAGCTGACCCCGAAGCCCCCCTGATCGAAATCGGCATGGGGACCATCGACAAG TCCAAGCCCTTCCTCTGTGTTATAGGGCACAATGTAGGCGGTGTAACCTACATGATGGACTACATGGAAGAAAACAACCT GACTGACAAGATGGAAATTGCCGGGCTCTGCTGTACCGCAATCGACCTTACAAGGTACAAGGAAGCTGACAGGAGACCAC CATATGCCAAGGTCATCGGTTCCATGGCCAAGGAACTAAAGGTTATCCGCTCCGGAATGCCTGATGTCATTGTTGTGGAC GAACAGTGTGTACGCGGTGACATCGTACCCGAAGCACAGAAACTCAAGATTCCGGTCATTGCATCAAATGCAAAGATTAT GTTCGGGCTTCCAAACAGGACCGATGCAGATGTTAATGAGACTATCGAGGAACTCAAGTCCGGAGCAATTCCAGGCTGTG TAATGCTGGACTACGAGAAACTCGGTGAACTCTGTATCAGGCTTACCATGGAAATGGCCCCGATCCGCGATGCATCCGGT ATCACTGCGATTCCAACAGATGAGGAATTAGCAAACTGGGTCGCAAAGTGTGCAGATTGTGGAGCCTGCCTGATTGCCTG CCCTGAAGAACTCGACATACCCGAAGCTATGGGATTTGCAAAGGAAGGAGATTACTCATACCTCGAAGGCCTGCATGACA TATGTATCGGCTGCCGCCGCTGCGAACAGGTCTGTAAGAAGGAAATTCCAATTCTTAACATAATCGAAAAAGTTTCCCAG AAGCAGATTGCAGAAGAGAAAGGCTGGATGAGAGCCGGCAGAGGACAGGTATCTGATGCCGAAATCCGTGCAGAAGGTCT TAACCTCGTCATGGGTACAACCCCAGGTATCATCGCAATCATCGGATGCCCGAACTATGCAGAAGGCACAAAGGACGTCT ACTACATTGCTGAAGAATTCCTGAAGAGGAACTTCATTGTGGTTACGACCGGCTGTGGAGCAATGGACATTGGTATGTTC AAGGACGACGACGGCAAGACTCTCTATGAGAGGTACCCTGGCGGATTCCAGTGCGGTGGACTCGTTAACATAGGATCCTG TGTTTCTAACGCCCATATTACCGGAGCAGCCGAGAAAGTCGCAGCTATCTTTGCCCAGAGGACCCTTGAAGGCAACCTCG CCGAGATCGCAGACTACATCCTTAACCGTGTAGGTGCTTGCGGACTTGCATGGGGTGCATTCTCACAGAAAGCTTCCTCA ATCGGTACCGGCTGTAACATTCTTGGTATCCCAGCAGTTCTTGGCCCACACTCCTCGAAGTACAGGAGAGCCCTGATTGC CAAGACCTATGAAGAAGACAAGTGGAAAGTCTATGATGCAAGGAACGGACAGGAGATGCCAATCCCACCAGCACCAGAAT TCCTCCTGACCACAGCAGAAACCTGGCAGGAAGCAATCCCGATGATGGCAAAGGCATGCATCCGCCCGTCTGACAACAGC ATGGGAAGAGCCATAAAGCTGACCCACTGGATGGAGCTGCACAAGAAATACCTTGGTGGTTCAGAACCTGAAGACTGGTG GAAGTTCGTCAGGAACGAAGCTGACCTCCCGCTGGCTAACCGTGAAGCGCTCCTCAAGAAGCTCGAGGCAGAACGCGGCT GGGAGATTGACTGGAAGAAGAAGAAGATCATTTCCGGTCCGAAGATCAAATTCGATGTCTCGGCACAGCCCACCAACCTC AAGAGACTTTGCAAGGAGGCCTGA
Upstream 100 bases:
>100_bases GCAAAATATATAATTAATAATCATTAAGAATATGCCGAAGATAAGATTGCAATCGTCTTGGCGAAGTTGACTTTAAACAA ATTTAGGAGGTAAAGCTCAA
Downstream 100 bases:
>100_bases AAATGGTTGACACTACCAAGAACACAAAGCTCTTTACCAGCTACGGAGTGAGCACCTCAAAAACCGTTGCTCCTGAAATG GCTGCAAAGCTTATCTCAAA
Product: acetyl-CoA decarbonylase/synthase complex subunit alpha
Products: NA
Alternate protein names: ACDS complex subunit alpha 2; ACDS complex carbon monoxide dehydrogenase 2; ACDS CODH 2
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MSKLTTGSFSIEDLESVQITINNIVGAAKEAAEEKAKELVKAGPTLFPGLESYRDDWNFKLLDRYEPVVTPMCDQCCYCT YGPCDLSGNKRGACGIDMMGHNGREFFLRVITGTACHAAHGRHLLDHLIETFGEDLPLNLGQSNVLTPNITISTGLSPKN LGEVKPAMEFVEEQLTQLLATVHAGQESAEIDYDSKALFSGSLDHVGMEISDVVQVAAYDFPKADPEAPLIEIGMGTIDK SKPFLCVIGHNVGGVTYMMDYMEENNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIGSMAKELKVIRSGMPDVIVVD EQCVRGDIVPEAQKLKIPVIASNAKIMFGLPNRTDADVNETIEELKSGAIPGCVMLDYEKLGELCIRLTMEMAPIRDASG ITAIPTDEELANWVAKCADCGACLIACPEELDIPEAMGFAKEGDYSYLEGLHDICIGCRRCEQVCKKEIPILNIIEKVSQ KQIAEEKGWMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAEGTKDVYYIAEEFLKRNFIVVTTGCGAMDIGMF KDDDGKTLYERYPGGFQCGGLVNIGSCVSNAHITGAAEKVAAIFAQRTLEGNLAEIADYILNRVGACGLAWGAFSQKASS IGTGCNILGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNS MGRAIKLTHWMELHKKYLGGSEPEDWWKFVRNEADLPLANREALLKKLEAERGWEIDWKKKKIISGPKIKFDVSAQPTNL KRLCKEA
Sequences:
>Translated_807_residues MSKLTTGSFSIEDLESVQITINNIVGAAKEAAEEKAKELVKAGPTLFPGLESYRDDWNFKLLDRYEPVVTPMCDQCCYCT YGPCDLSGNKRGACGIDMMGHNGREFFLRVITGTACHAAHGRHLLDHLIETFGEDLPLNLGQSNVLTPNITISTGLSPKN LGEVKPAMEFVEEQLTQLLATVHAGQESAEIDYDSKALFSGSLDHVGMEISDVVQVAAYDFPKADPEAPLIEIGMGTIDK SKPFLCVIGHNVGGVTYMMDYMEENNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIGSMAKELKVIRSGMPDVIVVD EQCVRGDIVPEAQKLKIPVIASNAKIMFGLPNRTDADVNETIEELKSGAIPGCVMLDYEKLGELCIRLTMEMAPIRDASG ITAIPTDEELANWVAKCADCGACLIACPEELDIPEAMGFAKEGDYSYLEGLHDICIGCRRCEQVCKKEIPILNIIEKVSQ KQIAEEKGWMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAEGTKDVYYIAEEFLKRNFIVVTTGCGAMDIGMF KDDDGKTLYERYPGGFQCGGLVNIGSCVSNAHITGAAEKVAAIFAQRTLEGNLAEIADYILNRVGACGLAWGAFSQKASS IGTGCNILGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNS MGRAIKLTHWMELHKKYLGGSEPEDWWKFVRNEADLPLANREALLKKLEAERGWEIDWKKKKIISGPKIKFDVSAQPTNL KRLCKEA >Mature_806_residues SKLTTGSFSIEDLESVQITINNIVGAAKEAAEEKAKELVKAGPTLFPGLESYRDDWNFKLLDRYEPVVTPMCDQCCYCTY GPCDLSGNKRGACGIDMMGHNGREFFLRVITGTACHAAHGRHLLDHLIETFGEDLPLNLGQSNVLTPNITISTGLSPKNL GEVKPAMEFVEEQLTQLLATVHAGQESAEIDYDSKALFSGSLDHVGMEISDVVQVAAYDFPKADPEAPLIEIGMGTIDKS KPFLCVIGHNVGGVTYMMDYMEENNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIGSMAKELKVIRSGMPDVIVVDE QCVRGDIVPEAQKLKIPVIASNAKIMFGLPNRTDADVNETIEELKSGAIPGCVMLDYEKLGELCIRLTMEMAPIRDASGI TAIPTDEELANWVAKCADCGACLIACPEELDIPEAMGFAKEGDYSYLEGLHDICIGCRRCEQVCKKEIPILNIIEKVSQK QIAEEKGWMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAEGTKDVYYIAEEFLKRNFIVVTTGCGAMDIGMFK DDDGKTLYERYPGGFQCGGLVNIGSCVSNAHITGAAEKVAAIFAQRTLEGNLAEIADYILNRVGACGLAWGAFSQKASSI GTGCNILGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNSM GRAIKLTHWMELHKKYLGGSEPEDWWKFVRNEADLPLANREALLKKLEAERGWEIDWKKKKIISGPKIKFDVSAQPTNLK RLCKEA
Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy
COG id: COG1152
COG function: function code C; CO dehydrogenase/acetyl-CoA synthase alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ACDA2_METMA (Q49163)
Other databases:
- EMBL: L26486 - EMBL: AE008384 - RefSeq: NP_632708.1 - ProteinModelPortal: Q49163 - SMR: Q49163 - GeneID: 1479026 - GenomeReviews: AE008384_GR - KEGG: mma:MM_0684 - NMPDR: fig|192952.1.peg.684 - HOGENOM: HBG539676 - OMA: ICCTAID - ProtClustDB: PRK00941 - BioCyc: MMAZ192952:MM0684-MONOMER - BRENDA: 1.2.99.2 - GO: GO:0005737 - GO: GO:0015948 - HAMAP: MF_01137 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR004460 - InterPro: IPR016101 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 - Gene3D: G3DSA:1.20.1270.30 - Gene3D: G3DSA:1.10.1060.10 - Gene3D: G3DSA:3.40.50.2030 - TIGRFAMs: TIGR00314
Pfam domain/function: PF03063 Prismane; SSF46548 Helical_ferredxn; SSF56821 Prismane_like
EC number: =1.2.99.2
Molecular weight: Translated: 88509; Mature: 88378
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLTTGSFSIEDLESVQITINNIVGAAKEAAEEKAKELVKAGPTLFPGLESYRDDWNFK CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEE LLDRYEPVVTPMCDQCCYCTYGPCDLSGNKRGACGIDMMGHNGREFFLRVITGTACHAAH EECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHH GRHLLDHLIETFGEDLPLNLGQSNVLTPNITISTGLSPKNLGEVKPAMEFVEEQLTQLLA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH TVHAGQESAEIDYDSKALFSGSLDHVGMEISDVVQVAAYDFPKADPEAPLIEIGMGTIDK HHHCCCCCCCCCCCCHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC SKPFLCVIGHNVGGVTYMMDYMEENNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIG CCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH SMAKELKVIRSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNAKIMFGLPNRTDADVNE HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHEEEEEEECCCEEEEECCCCCCCCHHH TIEELKSGAIPGCVMLDYEKLGELCIRLTMEMAPIRDASGITAIPTDEELANWVAKCADC HHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCC GACLIACPEELDIPEAMGFAKEGDYSYLEGLHDICIGCRRCEQVCKKEIPILNIIEKVSQ CEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KQIAEEKGWMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAEGTKDVYYIAEEF HHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH LKRNFIVVTTGCGAMDIGMFKDDDGKTLYERYPGGFQCGGLVNIGSCVSNAHITGAAEKV HHCCEEEEEECCCCEECCCEECCCCCCHHHHCCCCCCCCCCEEHHHHHCCCCCCCHHHHH AAIFAQRTLEGNLAEIADYILNRVGACGLAWGAFSQKASSIGTGCNILGIPAVLGPHSSK HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHH YRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNS HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHHCCCCCCC MGRAIKLTHWMELHKKYLGGSEPEDWWKFVRNEADLPLANREALLKKLEAERGWEIDWKK CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCH KKIISGPKIKFDVSAQPTNLKRLCKEA HHHCCCCCEEEECCCCCHHHHHHHHCC >Mature Secondary Structure SKLTTGSFSIEDLESVQITINNIVGAAKEAAEEKAKELVKAGPTLFPGLESYRDDWNFK CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEE LLDRYEPVVTPMCDQCCYCTYGPCDLSGNKRGACGIDMMGHNGREFFLRVITGTACHAAH EECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHH GRHLLDHLIETFGEDLPLNLGQSNVLTPNITISTGLSPKNLGEVKPAMEFVEEQLTQLLA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH TVHAGQESAEIDYDSKALFSGSLDHVGMEISDVVQVAAYDFPKADPEAPLIEIGMGTIDK HHHCCCCCCCCCCCCHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC SKPFLCVIGHNVGGVTYMMDYMEENNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIG CCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH SMAKELKVIRSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNAKIMFGLPNRTDADVNE HHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHEEEEEEECCCEEEEECCCCCCCCHHH TIEELKSGAIPGCVMLDYEKLGELCIRLTMEMAPIRDASGITAIPTDEELANWVAKCADC HHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCC GACLIACPEELDIPEAMGFAKEGDYSYLEGLHDICIGCRRCEQVCKKEIPILNIIEKVSQ CEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KQIAEEKGWMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAEGTKDVYYIAEEF HHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH LKRNFIVVTTGCGAMDIGMFKDDDGKTLYERYPGGFQCGGLVNIGSCVSNAHITGAAEKV HHCCEEEEEECCCCEECCCEECCCCCCHHHHCCCCCCCCCCEEHHHHHCCCCCCCHHHHH AAIFAQRTLEGNLAEIADYILNRVGACGLAWGAFSQKASSIGTGCNILGIPAVLGPHSSK HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHH YRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNS HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHHCCCCCCC MGRAIKLTHWMELHKKYLGGSEPEDWWKFVRNEADLPLANREALLKKLEAERGWEIDWKK CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCH KKIISGPKIKFDVSAQPTNLKRLCKEA HHHCCCCCEEEECCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8662887; 12125824