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The map label for this gene is rfbA [H]

Identifier: 21226759

GI number: 21226759

Start: 787432

End: 788280

Strand: Reverse

Name: rfbA [H]

Synonym: MM_0657

Alternate gene names: 21226759

Gene position: 788280-787432 (Counterclockwise)

Preceding gene: 21226760

Following gene: 21226758

Centisome position: 19.24

GC content: 42.52

Gene sequence:

>849_bases
ATGTGTTCTTCCATGACTGAACATGCAACTGACTACGAACTGGTTATTCGCCCTAAATATGGGCTTCTGGATCTGAACTG
GCAGGAGCTCAAGGAGTATAGGGAGCTTCTTTTCTTCCTTGCCCTGAGAGAAATCAAGATCAGGTATAAACAGACAATTA
TGGGAGCATCATGGGCATTATTGCAGCCTTTTTTTACGATGATAGTGTTTACTCTGATCTTCGGCCGGCTCGCACAGATG
CCTTCGGATGGAATACCCTACCCAATATTTTCCTACTCCGGTCTTCTTCTCTGGACTTATTTTTCAAATGCTCTTTCCCA
GTCAAGCAATAGCCTTGTTGACAATGCCCCTCTCCTCTCAAAGGTTTACATGCCCCGGATATTCATACCGACTGCACCAT
GTCTTTCAGGCCTTCTTGATTATGGAATTGCTATGAGCATTCTTGCAATAATGATGGTTTACTACCGATTTGTGCCTGGA
ATTTCAATACTTCTGTTGCCGTTAATTATACTCTTGACATTCATGCTTGCATCAGGAGTTGGTTACTGGCTCTCATCCAT
CTGTGTGAAATACAGGGATGTGAAGTTCATTCTTCCGTTCTTTATTCAGCTGCTACTGTTTGTATCACCGGTAATCTATC
CTGCAAATATTGTCGGTGAGAACTTGCAGTGGTTGCTTTACCTGAATCCCTTGACAGGTTTGATAAGTGCCCATCGTGCA
TGCCTTCTCGGGCATATTCCAGTAGATTTTGTCGGTCTGGGAATCTCAGCTGTATTGACTGTAGTAATATTTGTTAGTGG
TATACTTTACCTGAGAAGTACTGAAAAGTACTTTGCGGATTTGATTTAA

Upstream 100 bases:

>100_bases
TAAAAATATAAATGAAGTGAAAAGCTTAGTAAATAAAAGGCTTGAAATATTTATTAGCTGTGCAATAGAGCAGAATGTAT
CCACAGCTAAAAACAGGTAA

Downstream 100 bases:

>100_bases
ATGACAGCGTCAAAAAAGGAAGAACCGATAATTGAAGTAAAACATCTATCTAAACAGTACAATATCGGCGTGGACACGAC
TTACAAGACTCTATCTGAAA

Product: polysaccharide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MCSSMTEHATDYELVIRPKYGLLDLNWQELKEYRELLFFLALREIKIRYKQTIMGASWALLQPFFTMIVFTLIFGRLAQM
PSDGIPYPIFSYSGLLLWTYFSNALSQSSNSLVDNAPLLSKVYMPRIFIPTAPCLSGLLDYGIAMSILAIMMVYYRFVPG
ISILLLPLIILLTFMLASGVGYWLSSICVKYRDVKFILPFFIQLLLFVSPVIYPANIVGENLQWLLYLNPLTGLISAHRA
CLLGHIPVDFVGLGISAVLTVVIFVSGILYLRSTEKYFADLI

Sequences:

>Translated_282_residues
MCSSMTEHATDYELVIRPKYGLLDLNWQELKEYRELLFFLALREIKIRYKQTIMGASWALLQPFFTMIVFTLIFGRLAQM
PSDGIPYPIFSYSGLLLWTYFSNALSQSSNSLVDNAPLLSKVYMPRIFIPTAPCLSGLLDYGIAMSILAIMMVYYRFVPG
ISILLLPLIILLTFMLASGVGYWLSSICVKYRDVKFILPFFIQLLLFVSPVIYPANIVGENLQWLLYLNPLTGLISAHRA
CLLGHIPVDFVGLGISAVLTVVIFVSGILYLRSTEKYFADLI
>Mature_282_residues
MCSSMTEHATDYELVIRPKYGLLDLNWQELKEYRELLFFLALREIKIRYKQTIMGASWALLQPFFTMIVFTLIFGRLAQM
PSDGIPYPIFSYSGLLLWTYFSNALSQSSNSLVDNAPLLSKVYMPRIFIPTAPCLSGLLDYGIAMSILAIMMVYYRFVPG
ISILLLPLIILLTFMLASGVGYWLSSICVKYRDVKFILPFFIQLLLFVSPVIYPANIVGENLQWLLYLNPLTGLISAHRA
CLLGHIPVDFVGLGISAVLTVVIFVSGILYLRSTEKYFADLI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31962; Mature: 31962

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSSMTEHATDYELVIRPKYGLLDLNWQELKEYRELLFFLALREIKIRYKQTIMGASWAL
CCCCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LQPFFTMIVFTLIFGRLAQMPSDGIPYPIFSYSGLLLWTYFSNALSQSSNSLVDNAPLLS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHH
KVYMPRIFIPTAPCLSGLLDYGIAMSILAIMMVYYRFVPGISILLLPLIILLTFMLASGV
HHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
GYWLSSICVKYRDVKFILPFFIQLLLFVSPVIYPANIVGENLQWLLYLNPLTGLISAHRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECHHHHHHHHHHH
CLLGHIPVDFVGLGISAVLTVVIFVSGILYLRSTEKYFADLI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCSSMTEHATDYELVIRPKYGLLDLNWQELKEYRELLFFLALREIKIRYKQTIMGASWAL
CCCCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LQPFFTMIVFTLIFGRLAQMPSDGIPYPIFSYSGLLLWTYFSNALSQSSNSLVDNAPLLS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHH
KVYMPRIFIPTAPCLSGLLDYGIAMSILAIMMVYYRFVPGISILLLPLIILLTFMLASGV
HHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
GYWLSSICVKYRDVKFILPFFIQLLLFVSPVIYPANIVGENLQWLLYLNPLTGLISAHRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECHHHHHHHHHHH
CLLGHIPVDFVGLGISAVLTVVIFVSGILYLRSTEKYFADLI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]