| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226724
Identifier: 21226724
GI number: 21226724
Start: 754286
End: 754795
Strand: Direct
Name: 21226724
Synonym: MM_0622
Alternate gene names: NA
Gene position: 754286-754795 (Clockwise)
Preceding gene: 21226723
Following gene: 21226725
Centisome position: 18.41
GC content: 30.98
Gene sequence:
>510_bases ATGGGGAGACCTGAAATCTATCATATTGACCAAAAGATTTCTCTTGAGAAACTTGATTGGCTCATAAAGATTGAAAGAAA TACTAAAGTTCAACAGAAGTTATATTTTATTCGGTTTAGATATTTAGGCGATTCTATAGAGGAAGCAACATCGAGATTAG GAGTCACTAAAAGAATTGGTTATTATTGGCAAAATAGATGGAATGAACAAGGTTATGAGGGTTTACTTCACAAATCTGGT GCAGGTAGACCTTCTTATTTGAGTGATGAGAAAATACTTGAACTCAAGTCAATACTGGAAAGTAAAGACTTTTGGACTAC AGATGAAGTTAAAGATTTGATAAAAGATAAGTTTGGCATTGATTATTGCTTGAATTCCATAAGAAAACTATTGAAGAAAA TAGGTATGCACTATAATATTCCTTATTGTTTGGACTATAGAAGACCTGAAAATGCAGAAGAGATTTTAAAAAAATTTAGA AAATGCAATAAAAGAAAAAACTTCTCCTGA
Upstream 100 bases:
>100_bases GAGAAATACATTGTTGTGACCCATTTCCAGCGGGTTGTGGAAATTTCGGTTTATAGTCTTCACATAAATTATTTACATTT ATAAAACCATCTTTATACTT
Downstream 100 bases:
>100_bases TAAACATTATGTAATAGGCTTCCTTGACGAATCTTCACCACAAACAGCACCAGACACACCAAGGCTGTGGTCATTCGTGA AAAAACCTAAAATGTTCAAA
Product: transposase
Products: NA
Alternate protein names: Transposase Homolog; Transposase OrfA; Transposase-Like Protein
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MGRPEIYHIDQKISLEKLDWLIKIERNTKVQQKLYFIRFRYLGDSIEEATSRLGVTKRIGYYWQNRWNEQGYEGLLHKSG AGRPSYLSDEKILELKSILESKDFWTTDEVKDLIKDKFGIDYCLNSIRKLLKKIGMHYNIPYCLDYRRPENAEEILKKFR KCNKRKNFS
Sequences:
>Translated_169_residues MGRPEIYHIDQKISLEKLDWLIKIERNTKVQQKLYFIRFRYLGDSIEEATSRLGVTKRIGYYWQNRWNEQGYEGLLHKSG AGRPSYLSDEKILELKSILESKDFWTTDEVKDLIKDKFGIDYCLNSIRKLLKKIGMHYNIPYCLDYRRPENAEEILKKFR KCNKRKNFS >Mature_168_residues GRPEIYHIDQKISLEKLDWLIKIERNTKVQQKLYFIRFRYLGDSIEEATSRLGVTKRIGYYWQNRWNEQGYEGLLHKSGA GRPSYLSDEKILELKSILESKDFWTTDEVKDLIKDKFGIDYCLNSIRKLLKKIGMHYNIPYCLDYRRPENAEEILKKFRK CNKRKNFS
Specific function: Unknown
COG id: COG3415
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20352; Mature: 20221
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRPEIYHIDQKISLEKLDWLIKIERNTKVQQKLYFIRFRYLGDSIEEATSRLGVTKRIG CCCCCEEECCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHH YYWQNRWNEQGYEGLLHKSGAGRPSYLSDEKILELKSILESKDFWTTDEVKDLIKDKFGI HHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH DYCLNSIRKLLKKIGMHYNIPYCLDYRRPENAEEILKKFRKCNKRKNFS HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GRPEIYHIDQKISLEKLDWLIKIERNTKVQQKLYFIRFRYLGDSIEEATSRLGVTKRIG CCCCEEECCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHH YYWQNRWNEQGYEGLLHKSGAGRPSYLSDEKILELKSILESKDFWTTDEVKDLIKDKFGI HHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH DYCLNSIRKLLKKIGMHYNIPYCLDYRRPENAEEILKKFRKCNKRKNFS HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA