| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is hdrA2 [H]
Identifier: 21226489
GI number: 21226489
Start: 496300
End: 498717
Strand: Direct
Name: hdrA2 [H]
Synonym: MM_0387
Alternate gene names: 21226489
Gene position: 496300-498717 (Clockwise)
Preceding gene: 21226486
Following gene: 21226490
Centisome position: 12.12
GC content: 47.6
Gene sequence:
>2418_bases ATGACTGACGGGACTACTGACGGGTTGAACAAAGCTGCTGTATTTATCTGCCACTGCAGCGGGAATATCTCGGAACACGT TGATATCAATACAGTGAAAAAGACCCTAAAGGCAGAAGGTTTTTCAGTTTATGATTATGAATACCTGTGTTCAAGCCAGG GACAGGCTCTGATTAAAAAGAAAATTTCGGAAGGGCATGTGGACAGGGTGGTAATAGGTTCATGTACTCCTTCCAAACAC GGCACTCTTTTCAAAAAGTGCATACAGGAAACCGGATTGAACAGGGCAGGGCTTGAGATTGCAAACCTGAGGGAACAGTG TGCCTGGGTGCACCCTGACAGAGAAGGAGCTACTGAAAAAGCTCTCTCCCTCCTTAAAGCCAAGCTGAAGCGCCTGGAAA ACATAGAGCCGCTGGAAGATATAAAAGTAGACATTGCCCAGCAGGTTCTTGTTATCGGCGGAGGGATTGCAGGGATCACG GCTGCTCTTAACCTTGCAGATAACGGGGTTCCCACTTTCCTTGTGGAGAAAGACTCAAGCATAGGCGGGCAGATGGCTAA AATCGGGAAAATCTTTTCTCCTGATAAGCTTGCGGAAGAGTGTGCGATGTGCTCGCTCAGCCCCCTTATGAATGAGGTTG CAGCCCACCCAAGGATTACTCTTTTGACCTGGACGGAAGTAGAAAAGCTTAGCGGAAGTGCAGGAAACTTTACTGTCAGG CTAAAAAAGAAACCGAGATATGTGAAAGACAACTGTATAGCATGTGGGAAGTGCAGCAGGGTCTGTCCTGTCTCTGTTGA AGACGAGTTCAACTGCGGCTATATGGACAAAAAGGCAATTTCTCTTCGTTTCTCTCAGTCAGTCCCAAAGGTTTACTTCA TTGACCCTGACAGCTGCCTGCGGTTAAAAGGGGAAAACTGCGGAAAGTGTGCAGAAGCCTGCAAAACAGGAGCTATCGAT TTCTCTCAGAAAGAAGAGATCATAGAACTGAATGTGGGTGCAGTTGTCGTTGCAACAGGCTTTGAAGAGTATGACGTTTC CCAGAAACCCCAGTACGGGTATGGGATTTTTGAAAATGTTCTTACCCAGATGGAACTTGCAAGAGTCCTGGGCATCAACG GACCTACAAAAGGGGAACTTCTCAGGATCTCCGATTTCAGCAAAGCTTCCAGCGACCCTGCTCCTTCAACATGTGATTCA AGGTGCGAAAGCTCGTCTGATCATCCCTTTGAGGTTGAAACTCCAGAAAGGATAGTCATGATCCAGTGTGTTGGTTCAAG GGACGAAAAGGAAGGAGGAAACCGCTACTGCTCAAGGTACTGCTGTATGGCAGCCCTGAAGCATGCAAGCCTGATAAAGA AAAGGTATCCGAAAACGGAAATCACGATCTGCTATATTGACATGAGGGCTTTTGGCTTTTACGAAAACTACTACCGTGCA GTCCAGGAGACCGGGGTTAACTTTGTGAGGGGAAGGCCTGCAGAAGTCATTGAAAAACCGGATAAGAGCCTTGTTGTAAG GGTTGAAGACACCCTTAGCCAGAAAATAAAGGAAATCCCTGCCGACATGGTAGTACTTTCCGCAGCTATGGTACCATCTC CGGGGACAAAGAAAATTGCCAGTGTGCTGAACCTCAGCCAGGACGAAAGCGGGTTCATCAAAGAGAGGCACTCCAAACTG AAGCCGGTGGACTGTTCCCTTGATGGGATTTTTGTCTGCGGCACTGCTCAGAGCCCCAAGGATGTTACTGATACAATTGC CCAGGCAGGACTTGCAGCCGTAAGAGCAAGGGCTTTCATTACAGACAGCCCGAAGGTGCTGGATAACGAAATTGCAGCCA TAAACCAGCTACTCTGCACCCGGTGCGGGGAATGTCTTAAGTGCCCGTTTGATGCCCTTTCTATAAATGAAAATGGGAGG GTTGTTCTTGACCCACTTATATGCACAGGCTGCGGGTACTGTACCGAACTCTGCAGGGAAGGAGCTGTCCAGATTGCAGG TTTTACGAAATCCCAGCTAAAGGCTGAGTTAGAAGGCGTTCTTGAAGAAGGGGACGTACTTGGCTTTGTGAACAGCGGAA TATCTTCCCTTACCTGTGACAATATCGGTAACAGTGTGCTCACATATCCTTCAAGTGTTAAATTGATCAAGGTTCCTACC TGCCTGATAGTTGACAGAGACCTGGTGCTGCATGCATTCAGGCATGGGGCGTCTTCTGTTCTTTTTGTGGAAGACCCGCC TGACAGCCCGAGAGCTGAAGTGATATATCCTCTTACTGTCAGCCATTTCGAAAAACTCAAAGAAGAACTTGGAGATTCAG GAAAGAGGATCCATTTCAAAAAAGCGTATGTTCCGAATATCAAAGGGCTTGCAGGAACTTTTACCAGCCTTGCCCGGGAA GGAGAGATGATAAAATGA
Upstream 100 bases:
>100_bases CCTGTTTCTGCAACAACTATCAAAAAATTGTCCTTTTTGAGACATTCAGTATACCTTTTCTGGCAAGTCTTATATACAAA TCCCTGAAAGATTTAGTATA
Downstream 100 bases:
>100_bases TTCCATATGTAAACGAATATGATACTCCGAACTGTAATACTCTTGCAGAGACAGCAAAAAAGAGTATCAGAACCCCTGAA TCTCTGGGGCTTGACCGCTG
Product: heterodisulfide reductase subunit HdrA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 805; Mature: 804
Protein sequence:
>805_residues MTDGTTDGLNKAAVFICHCSGNISEHVDINTVKKTLKAEGFSVYDYEYLCSSQGQALIKKKISEGHVDRVVIGSCTPSKH GTLFKKCIQETGLNRAGLEIANLREQCAWVHPDREGATEKALSLLKAKLKRLENIEPLEDIKVDIAQQVLVIGGGIAGIT AALNLADNGVPTFLVEKDSSIGGQMAKIGKIFSPDKLAEECAMCSLSPLMNEVAAHPRITLLTWTEVEKLSGSAGNFTVR LKKKPRYVKDNCIACGKCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCLRLKGENCGKCAEACKTGAID FSQKEEIIELNVGAVVVATGFEEYDVSQKPQYGYGIFENVLTQMELARVLGINGPTKGELLRISDFSKASSDPAPSTCDS RCESSSDHPFEVETPERIVMIQCVGSRDEKEGGNRYCSRYCCMAALKHASLIKKRYPKTEITICYIDMRAFGFYENYYRA VQETGVNFVRGRPAEVIEKPDKSLVVRVEDTLSQKIKEIPADMVVLSAAMVPSPGTKKIASVLNLSQDESGFIKERHSKL KPVDCSLDGIFVCGTAQSPKDVTDTIAQAGLAAVRARAFITDSPKVLDNEIAAINQLLCTRCGECLKCPFDALSINENGR VVLDPLICTGCGYCTELCREGAVQIAGFTKSQLKAELEGVLEEGDVLGFVNSGISSLTCDNIGNSVLTYPSSVKLIKVPT CLIVDRDLVLHAFRHGASSVLFVEDPPDSPRAEVIYPLTVSHFEKLKEELGDSGKRIHFKKAYVPNIKGLAGTFTSLARE GEMIK
Sequences:
>Translated_805_residues MTDGTTDGLNKAAVFICHCSGNISEHVDINTVKKTLKAEGFSVYDYEYLCSSQGQALIKKKISEGHVDRVVIGSCTPSKH GTLFKKCIQETGLNRAGLEIANLREQCAWVHPDREGATEKALSLLKAKLKRLENIEPLEDIKVDIAQQVLVIGGGIAGIT AALNLADNGVPTFLVEKDSSIGGQMAKIGKIFSPDKLAEECAMCSLSPLMNEVAAHPRITLLTWTEVEKLSGSAGNFTVR LKKKPRYVKDNCIACGKCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCLRLKGENCGKCAEACKTGAID FSQKEEIIELNVGAVVVATGFEEYDVSQKPQYGYGIFENVLTQMELARVLGINGPTKGELLRISDFSKASSDPAPSTCDS RCESSSDHPFEVETPERIVMIQCVGSRDEKEGGNRYCSRYCCMAALKHASLIKKRYPKTEITICYIDMRAFGFYENYYRA VQETGVNFVRGRPAEVIEKPDKSLVVRVEDTLSQKIKEIPADMVVLSAAMVPSPGTKKIASVLNLSQDESGFIKERHSKL KPVDCSLDGIFVCGTAQSPKDVTDTIAQAGLAAVRARAFITDSPKVLDNEIAAINQLLCTRCGECLKCPFDALSINENGR VVLDPLICTGCGYCTELCREGAVQIAGFTKSQLKAELEGVLEEGDVLGFVNSGISSLTCDNIGNSVLTYPSSVKLIKVPT CLIVDRDLVLHAFRHGASSVLFVEDPPDSPRAEVIYPLTVSHFEKLKEELGDSGKRIHFKKAYVPNIKGLAGTFTSLARE GEMIK >Mature_804_residues TDGTTDGLNKAAVFICHCSGNISEHVDINTVKKTLKAEGFSVYDYEYLCSSQGQALIKKKISEGHVDRVVIGSCTPSKHG TLFKKCIQETGLNRAGLEIANLREQCAWVHPDREGATEKALSLLKAKLKRLENIEPLEDIKVDIAQQVLVIGGGIAGITA ALNLADNGVPTFLVEKDSSIGGQMAKIGKIFSPDKLAEECAMCSLSPLMNEVAAHPRITLLTWTEVEKLSGSAGNFTVRL KKKPRYVKDNCIACGKCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCLRLKGENCGKCAEACKTGAIDF SQKEEIIELNVGAVVVATGFEEYDVSQKPQYGYGIFENVLTQMELARVLGINGPTKGELLRISDFSKASSDPAPSTCDSR CESSSDHPFEVETPERIVMIQCVGSRDEKEGGNRYCSRYCCMAALKHASLIKKRYPKTEITICYIDMRAFGFYENYYRAV QETGVNFVRGRPAEVIEKPDKSLVVRVEDTLSQKIKEIPADMVVLSAAMVPSPGTKKIASVLNLSQDESGFIKERHSKLK PVDCSLDGIFVCGTAQSPKDVTDTIAQAGLAAVRARAFITDSPKVLDNEIAAINQLLCTRCGECLKCPFDALSINENGRV VLDPLICTGCGYCTELCREGAVQIAGFTKSQLKAELEGVLEEGDVLGFVNSGISSLTCDNIGNSVLTYPSSVKLIKVPTC LIVDRDLVLHAFRHGASSVLFVEDPPDSPRAEVIYPLTVSHFEKLKEELGDSGKRIHFKKAYVPNIKGLAGTFTSLAREG EMIK
Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). May act as the catalytic subunit [H]
COG id: COG1148
COG function: function code C; Heterodisulfide reductase, subunit A and related polyferredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR003953 - InterPro: IPR012285 [H]
Pfam domain/function: PF00890 FAD_binding_2; PF00037 Fer4 [H]
EC number: =1.8.98.1 [H]
Molecular weight: Translated: 87748; Mature: 87617
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDGTTDGLNKAAVFICHCSGNISEHVDINTVKKTLKAEGFSVYDYEYLCSSQGQALIKK CCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHH KISEGHVDRVVIGSCTPSKHGTLFKKCIQETGLNRAGLEIANLREQCAWVHPDREGATEK HHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHH ALSLLKAKLKRLENIEPLEDIKVDIAQQVLVIGGGIAGITAALNLADNGVPTFLVEKDSS HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHECCCCCCCEEEEECCCC IGGQMAKIGKIFSPDKLAEECAMCSLSPLMNEVAAHPRITLLTWTEVEKLSGSAGNFTVR CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCEEEE LKKKPRYVKDNCIACGKCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCL EECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCHHE RLKGENCGKCAEACKTGAIDFSQKEEIIELNVGAVVVATGFEEYDVSQKPQYGYGIFENV EECCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCHHCCCCCCCCCCHHHHHHH LTQMELARVLGINGPTKGELLRISDFSKASSDPAPSTCDSRCESSSDHPFEVETPERIVM HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCEEEE IQCVGSRDEKEGGNRYCSRYCCMAALKHASLIKKRYPKTEITICYIDMRAFGFYENYYRA EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHH VQETGVNFVRGRPAEVIEKPDKSLVVRVEDTLSQKIKEIPADMVVLSAAMVPSPGTKKIA HHHCCCCEECCCCHHHHCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH SVLNLSQDESGFIKERHSKLKPVDCSLDGIFVCGTAQSPKDVTDTIAQAGLAAVRARAFI HHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEE TDSPKVLDNEIAAINQLLCTRCGECLKCPFDALSINENGRVVLDPLICTGCGYCTELCRE CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCEEECCHHHCCCHHHHHHHHC GAVQIAGFTKSQLKAELEGVLEEGDVLGFVNSGISSLTCDNIGNSVLTYPSSVKLIKVPT CCEEEECCCHHHHHHHHHHHHHCCCEEEEHHCCCCCEEHHHCCCCEEECCCCEEEEECCE CLIVDRDLVLHAFRHGASSVLFVEDPPDSPRAEVIYPLTVSHFEKLKEELGDSGKRIHFK EEEECHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEE KAYVPNIKGLAGTFTSLAREGEMIK ECCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure TDGTTDGLNKAAVFICHCSGNISEHVDINTVKKTLKAEGFSVYDYEYLCSSQGQALIKK CCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHH KISEGHVDRVVIGSCTPSKHGTLFKKCIQETGLNRAGLEIANLREQCAWVHPDREGATEK HHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHH ALSLLKAKLKRLENIEPLEDIKVDIAQQVLVIGGGIAGITAALNLADNGVPTFLVEKDSS HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHECCCCCCCEEEEECCCC IGGQMAKIGKIFSPDKLAEECAMCSLSPLMNEVAAHPRITLLTWTEVEKLSGSAGNFTVR CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCEEEE LKKKPRYVKDNCIACGKCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCL EECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCHHE RLKGENCGKCAEACKTGAIDFSQKEEIIELNVGAVVVATGFEEYDVSQKPQYGYGIFENV EECCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCHHCCCCCCCCCCHHHHHHH LTQMELARVLGINGPTKGELLRISDFSKASSDPAPSTCDSRCESSSDHPFEVETPERIVM HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCEEEE IQCVGSRDEKEGGNRYCSRYCCMAALKHASLIKKRYPKTEITICYIDMRAFGFYENYYRA EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHH VQETGVNFVRGRPAEVIEKPDKSLVVRVEDTLSQKIKEIPADMVVLSAAMVPSPGTKKIA HHHCCCCEECCCCHHHHCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH SVLNLSQDESGFIKERHSKLKPVDCSLDGIFVCGTAQSPKDVTDTIAQAGLAAVRARAFI HHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEE TDSPKVLDNEIAAINQLLCTRCGECLKCPFDALSINENGRVVLDPLICTGCGYCTELCRE CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCEEECCHHHCCCHHHHHHHHC GAVQIAGFTKSQLKAELEGVLEEGDVLGFVNSGISSLTCDNIGNSVLTYPSSVKLIKVPT CCEEEECCCHHHHHHHHHHHHHCCCEEEEHHCCCCCEEHHHCCCCEEECCCCEEEEECCE CLIVDRDLVLHAFRHGASSVLFVEDPPDSPRAEVIYPLTVSHFEKLKEELGDSGKRIHFK EEEECHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEE KAYVPNIKGLAGTFTSLAREGEMIK ECCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9063468; 11930014 [H]