Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226313
Identifier: 21226313
GI number: 21226313
Start: 286021
End: 288195
Strand: Direct
Name: 21226313
Synonym: MM_0211
Alternate gene names: NA
Gene position: 286021-288195 (Clockwise)
Preceding gene: 21226308
Following gene: 21226321
Centisome position: 6.98
GC content: 44.14
Gene sequence:
>2175_bases ATGATAATCTTATTTTCGTCTCTGTCCATCAGCCCGAACCTCGCAGCCGGAAGTGCCGAAAACTTAGAGCCGCCCCTGAA CAGCACATCAATTTCAGACACTGCAATTGAAGAAGCACCTCTGAACCCGGAATTTCTGAACCCCGGAAAATCAGAATCAT TAGAGCCTGTTTCATCCTGTGACTACGGGCATGCCTCAGGCCCGGGGTATACCCCCCCTCCGGTAAATATACCAGCACTC TCACAGAAAGGGGGAAAGCTTCTGCTCAGGGCGCAGGGTTCGGAACTCCCTTCAACGTATGATTTGCGTGAACAGGGAAG GATTACATCTGTAAAAAACCAGGGAGACACCGGAAGCTGCTGGGCTTTTTCAAGCCTTGCATCCCTTGAATCTTATATTC TGGGGACAGAGGGAAATAGTAGAGACTTTTCCGAAAATAACATGAAAAATCTTGTCACAAGGTACTATTCCGATGGTTTT GACCTGACTCCCGATAACGGCGGAAATTCTTTCATAGCCATGGCATATCTTACCCGCTGGTCAGGGCCTGTAAATGAATC TGCAGACCCATATAATGAAAACTCGGTCAATTCCCCTGCAGGGCTTCCTGTGCAGAAACATGTTCAGGAAGTAGTTGTAC TGCCTGAGAGAACCGGGCCTCTGGATAACGAGTTAATTAAAAGGGCACTTATGGATAAGGGAGCTGTGTTTTCTACAATA TGCTGGAATTTGCCGGATTATCATGATAAGAATTACACCTACAGATACACCGGATCAAATTCTGCAAATCATGCGATAAC CATAGTAGGCTGGGATGATTCCTTTGACAGACACAGGTTCAAACAGGTTCCATCAGGAAATGGAGCTTTTATTGTAAAGA ACAGCTGGGGAGAATCCTGGGGAGAAGATGGATATTTCTATATTTCCTATTATGATACCAGTATTGGATACAGAGAAAAT GCAGTCTTTACGGCTTCGGAAAAAGAGAATTTTGACTATATCTACCAGTATGACCCCCTCGGCTGGATAACCCAAATAGG TTATTCCGAATTAACCGCCTGGGGAAGCAATGTTTTTACCACGGAAAGAAATGAAAAACTGGAAGCTATAGGGTTCTATA CTACAGATCTCAATACGGCTTATGAGATCTATGTATACAAAAACCCGACAAACGGCCCGATTAATTCATTAAAAAATTAT GCTGTAAAGGAAAGCGGTACCTGCTCATTTCCCGGATATCACACCCACATACTTAATTCTCCTGTAAACCTGATTCCGGG AGAGAAATTTTCTGTTGTTATAAAGTGCAGGAATCCTTCTTACGTATACCCTCTTGCAGTTGAGAAACAGTACCTCGATT ACAGCAGTAAGGCACAGGCAAATCCCGGGGAGAGCTATGTAAGCCGGGACGGGAACAGCTGGAAGGACCTGACATCAGTT GTCGAATACGCGGAAACAAACCTCTGTATAAAGGCGTTTACAACTGTCAATGAGCTGCCAGAAGCTGGATTCTCATCAAA CATTACCAGCTGGGTTTCTCCTCTTACAGTCCAGTTCACTGACCTTTCAACAGGTGCCCTGTCATGGGAATGGGATTTTA ACGGGGACGGGATTACAGACTCAACAACCAAAAACCCTGTCTGCACCTACACATCTTACGGAAATTATACCGTTTCATTA AATGCAAGCAACAGGAAAGGTTTTGACACCGAAATAAAACCCGGTTATATAACAGTAAGCCCTCTATCAATTATCTCTTC AAGTCCCGGAGGAAATATCACTACCTATGAAGGGGAAAGGCAGGAATTCAATATCAGCACAAATCATAACACCAGTGCAA ACTGGTATGTTAACGGAACGAAAAAACTTACCGAAACCGGTGTTAAAAGCAGTTCATATTCGGAAAGTACTCTGTTTCCA GGAACATATGATGTTACCGTGCTTGTCATAACAGGAAACGAAAATGTTATGCTTACCTGGAACTGGACAGTCGTTGACTG GAACCCATGGGACGATTTGACCTCCCTGGATGGGAAAAACATAAGCACGGAAGAACTCCAGGAAGCAATACACATCTATA AAAACGGCCTACCTATCCCAGGGACAGAAACCAAGCTAACAGACGAAGGACTCATAAAACTGATAAGGCTCTGGAAAGAA GGAGCTGCAAATTGA
Upstream 100 bases:
>100_bases CCTGCTATGCCAGTTACTCCATGCTGTCTTTCATCTAACTGAAAACCAATCCACCCGAGGCCGAGAATTTTTGAAAAAGA TAAATTCCTTTTTGCTTTCA
Downstream 100 bases:
>100_bases AAAGAGAATCAGCAAGAGGGAAACTGTAAAATGAGAGGGAAACTGTAAAATGTTTCCCGTTAATTTTTTGTTTTTATTCC ACGCCTTCAATTGCTCAATT
Product: cysteine proteinase
Products: NA
Alternate protein names: Peptidase C1A Papain; Adhesin-Like Protein With Cysteine Protease Domain; Cysteine Proteinase; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase-Like Protein; PKD Domain-Containing Protein; Adhesin-Like Protein; Surface Layer Protein; Surface Layer Protein B; Cell Surface-Associated Cysteine Protease; PKD Domain Containing Protein; Preprotein Translocase Subunit SecD-Like Protein; Papain Family Protease; Surface Antigen Gene; Peptidase S8 And; Cell Surface Glycoprotein; KP-43 Peptidase; Asn/Thr-Rich Large Protein Family Protein; Cysteine Protease C1 Family Protein; Papain Family Cysteine Protease; PKD Repeat-Containing Protein; Cysteine Peptidase
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MIILFSSLSISPNLAAGSAENLEPPLNSTSISDTAIEEAPLNPEFLNPGKSESLEPVSSCDYGHASGPGYTPPPVNIPAL SQKGGKLLLRAQGSELPSTYDLREQGRITSVKNQGDTGSCWAFSSLASLESYILGTEGNSRDFSENNMKNLVTRYYSDGF DLTPDNGGNSFIAMAYLTRWSGPVNESADPYNENSVNSPAGLPVQKHVQEVVVLPERTGPLDNELIKRALMDKGAVFSTI CWNLPDYHDKNYTYRYTGSNSANHAITIVGWDDSFDRHRFKQVPSGNGAFIVKNSWGESWGEDGYFYISYYDTSIGYREN AVFTASEKENFDYIYQYDPLGWITQIGYSELTAWGSNVFTTERNEKLEAIGFYTTDLNTAYEIYVYKNPTNGPINSLKNY AVKESGTCSFPGYHTHILNSPVNLIPGEKFSVVIKCRNPSYVYPLAVEKQYLDYSSKAQANPGESYVSRDGNSWKDLTSV VEYAETNLCIKAFTTVNELPEAGFSSNITSWVSPLTVQFTDLSTGALSWEWDFNGDGITDSTTKNPVCTYTSYGNYTVSL NASNRKGFDTEIKPGYITVSPLSIISSSPGGNITTYEGERQEFNISTNHNTSANWYVNGTKKLTETGVKSSSYSESTLFP GTYDVTVLVITGNENVMLTWNWTVVDWNPWDDLTSLDGKNISTEELQEAIHIYKNGLPIPGTETKLTDEGLIKLIRLWKE GAAN
Sequences:
>Translated_724_residues MIILFSSLSISPNLAAGSAENLEPPLNSTSISDTAIEEAPLNPEFLNPGKSESLEPVSSCDYGHASGPGYTPPPVNIPAL SQKGGKLLLRAQGSELPSTYDLREQGRITSVKNQGDTGSCWAFSSLASLESYILGTEGNSRDFSENNMKNLVTRYYSDGF DLTPDNGGNSFIAMAYLTRWSGPVNESADPYNENSVNSPAGLPVQKHVQEVVVLPERTGPLDNELIKRALMDKGAVFSTI CWNLPDYHDKNYTYRYTGSNSANHAITIVGWDDSFDRHRFKQVPSGNGAFIVKNSWGESWGEDGYFYISYYDTSIGYREN AVFTASEKENFDYIYQYDPLGWITQIGYSELTAWGSNVFTTERNEKLEAIGFYTTDLNTAYEIYVYKNPTNGPINSLKNY AVKESGTCSFPGYHTHILNSPVNLIPGEKFSVVIKCRNPSYVYPLAVEKQYLDYSSKAQANPGESYVSRDGNSWKDLTSV VEYAETNLCIKAFTTVNELPEAGFSSNITSWVSPLTVQFTDLSTGALSWEWDFNGDGITDSTTKNPVCTYTSYGNYTVSL NASNRKGFDTEIKPGYITVSPLSIISSSPGGNITTYEGERQEFNISTNHNTSANWYVNGTKKLTETGVKSSSYSESTLFP GTYDVTVLVITGNENVMLTWNWTVVDWNPWDDLTSLDGKNISTEELQEAIHIYKNGLPIPGTETKLTDEGLIKLIRLWKE GAAN >Mature_724_residues MIILFSSLSISPNLAAGSAENLEPPLNSTSISDTAIEEAPLNPEFLNPGKSESLEPVSSCDYGHASGPGYTPPPVNIPAL SQKGGKLLLRAQGSELPSTYDLREQGRITSVKNQGDTGSCWAFSSLASLESYILGTEGNSRDFSENNMKNLVTRYYSDGF DLTPDNGGNSFIAMAYLTRWSGPVNESADPYNENSVNSPAGLPVQKHVQEVVVLPERTGPLDNELIKRALMDKGAVFSTI CWNLPDYHDKNYTYRYTGSNSANHAITIVGWDDSFDRHRFKQVPSGNGAFIVKNSWGESWGEDGYFYISYYDTSIGYREN AVFTASEKENFDYIYQYDPLGWITQIGYSELTAWGSNVFTTERNEKLEAIGFYTTDLNTAYEIYVYKNPTNGPINSLKNY AVKESGTCSFPGYHTHILNSPVNLIPGEKFSVVIKCRNPSYVYPLAVEKQYLDYSSKAQANPGESYVSRDGNSWKDLTSV VEYAETNLCIKAFTTVNELPEAGFSSNITSWVSPLTVQFTDLSTGALSWEWDFNGDGITDSTTKNPVCTYTSYGNYTVSL NASNRKGFDTEIKPGYITVSPLSIISSSPGGNITTYEGERQEFNISTNHNTSANWYVNGTKKLTETGVKSSSYSESTLFP GTYDVTVLVITGNENVMLTWNWTVVDWNPWDDLTSLDGKNISTEELQEAIHIYKNGLPIPGTETKLTDEGLIKLIRLWKE GAAN
Specific function: Unknown
COG id: COG4870
COG function: function code O; Cysteine protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4503151, Length=220, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=7e-17, Organism=Homo sapiens, GI4503155, Length=235, Percent_Identity=28.936170212766, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI22202619, Length=235, Percent_Identity=28.936170212766, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI23110960, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17563798, Length=223, Percent_Identity=28.6995515695067, Blast_Score=75, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71993922, Length=232, Percent_Identity=28.0172413793103, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115533516, Length=264, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115533514, Length=264, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24654434, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI45552699, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI24654437, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI24654439, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI19922450, Length=217, Percent_Identity=29.4930875576037, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI24644155, Length=244, Percent_Identity=29.0983606557377, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644153, Length=244, Percent_Identity=29.0983606557377, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80041; Mature: 80041
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS50093 PKD ; PS00139 THIOL_PROTEASE_CYS ; PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIILFSSLSISPNLAAGSAENLEPPLNSTSISDTAIEEAPLNPEFLNPGKSESLEPVSSC CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCHHCC DYGHASGPGYTPPPVNIPALSQKGGKLLLRAQGSELPSTYDLREQGRITSVKNQGDTGSC CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCCCC WAFSSLASLESYILGTEGNSRDFSENNMKNLVTRYYSDGFDLTPDNGGNSFIAMAYLTRW HHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHC SGPVNESADPYNENSVNSPAGLPVQKHVQEVVVLPERTGPLDNELIKRALMDKGAVFSTI CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCEEEHH CWNLPDYHDKNYTYRYTGSNSANHAITIVGWDDSFDRHRFKQVPSGNGAFIVKNSWGESW HCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCCCCC GEDGYFYISYYDTSIGYRENAVFTASEKENFDYIYQYDPLGWITQIGYSELTAWGSNVFT CCCCEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHCCHHHHHHCCCCEEE TERNEKLEAIGFYTTDLNTAYEIYVYKNPTNGPINSLKNYAVKESGTCSFPGYHTHILNS CCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECC PVNLIPGEKFSVVIKCRNPSYVYPLAVEKQYLDYSSKAQANPGESYVSRDGNSWKDLTSV CCCCCCCCCEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHH VEYAETNLCIKAFTTVNELPEAGFSSNITSWVSPLTVQFTDLSTGALSWEWDFNGDGITD HHHHHCCEEEEEHHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCC STTKNPVCTYTSYGNYTVSLNASNRKGFDTEIKPGYITVSPLSIISSSPGGNITTYEGER CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHCCCCCCCCEEEECCCC QEFNISTNHNTSANWYVNGTKKLTETGVKSSSYSESTLFPGTYDVTVLVITGNENVMLTW EEEEEECCCCCCEEEEECCCHHHHHHCCCCCCCCCCEECCCCEEEEEEEEECCCCEEEEE NWTVVDWNPWDDLTSLDGKNISTEELQEAIHIYKNGLPIPGTETKLTDEGLIKLIRLWKE EEEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH GAAN CCCC >Mature Secondary Structure MIILFSSLSISPNLAAGSAENLEPPLNSTSISDTAIEEAPLNPEFLNPGKSESLEPVSSC CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCHHCC DYGHASGPGYTPPPVNIPALSQKGGKLLLRAQGSELPSTYDLREQGRITSVKNQGDTGSC CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCCCC WAFSSLASLESYILGTEGNSRDFSENNMKNLVTRYYSDGFDLTPDNGGNSFIAMAYLTRW HHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHC SGPVNESADPYNENSVNSPAGLPVQKHVQEVVVLPERTGPLDNELIKRALMDKGAVFSTI CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCEEEHH CWNLPDYHDKNYTYRYTGSNSANHAITIVGWDDSFDRHRFKQVPSGNGAFIVKNSWGESW HCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEEECCCCCCC GEDGYFYISYYDTSIGYRENAVFTASEKENFDYIYQYDPLGWITQIGYSELTAWGSNVFT CCCCEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCHHHHHCCHHHHHHCCCCEEE TERNEKLEAIGFYTTDLNTAYEIYVYKNPTNGPINSLKNYAVKESGTCSFPGYHTHILNS CCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECC PVNLIPGEKFSVVIKCRNPSYVYPLAVEKQYLDYSSKAQANPGESYVSRDGNSWKDLTSV CCCCCCCCCEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHH VEYAETNLCIKAFTTVNELPEAGFSSNITSWVSPLTVQFTDLSTGALSWEWDFNGDGITD HHHHHCCEEEEEHHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCC STTKNPVCTYTSYGNYTVSLNASNRKGFDTEIKPGYITVSPLSIISSSPGGNITTYEGER CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHCCCCCCCCEEEECCCC QEFNISTNHNTSANWYVNGTKKLTETGVKSSSYSESTLFPGTYDVTVLVITGNENVMLTW EEEEEECCCCCCEEEEECCCHHHHHHCCCCCCCCCCEECCCCEEEEEEEEECCCCEEEEE NWTVVDWNPWDDLTSLDGKNISTEELQEAIHIYKNGLPIPGTETKLTDEGLIKLIRLWKE EEEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH GAAN CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA