| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is lon [C]
Identifier: 21226230
GI number: 21226230
Start: 158684
End: 160753
Strand: Reverse
Name: lon [C]
Synonym: MM_0128
Alternate gene names: 21226230
Gene position: 160753-158684 (Counterclockwise)
Preceding gene: 21226232
Following gene: 21226229
Centisome position: 3.92
GC content: 49.18
Gene sequence:
>2070_bases ATGGTGTATAATAATAATCAGAACATAGACGGATCTTCGGAGAATATGGACAGGCAGGCCCATAAAATGGAAGAGCCTGT TCCGAAAGTTGATCCGTCTGCGGCCGACCAGACAAAGGATGAGCCTAACAAGGTCATGGCCGAGTCTGAGTTACATGAAG ATATAGATGAAGATGTTGACATCGGCTTCCAGTTTGAAGACACTTCAAATATAGAGGTCCCCAAGCTCCTTATTGACCAG GTGCTGGGTCAGGAACACGCAGTGGAGGTCGTGAGGAAGGCCGCCAGCCAGAGGCGTCACATCATGATGATAGGGACTCC AGGTACAGGAAAGTCCCTGCTTGCAAAAGCAATGGCAGAACTTCTTCCTAAAGAGGAGCTCAAGGATATCCTTGTATATC CCAATCTTGAGGATCTCAATAACCCCAAGATAAGAGAGGTTCCGGCCGGAAAAGGTAGAGAAATTGTCATGGCTCACAAG ATGGAAGCAAGAAAGAAAGCCCAGGCACGGAACATGCTTATGATGCTCTTTGTTGTGGGTATTATTATCTATTCTTATTT CGTCTCCCAGCTTCTCTGGGGTATTATTGCAGGCATATTGATTCTCATGTTAACCCGCCAGTTCCTTCCCAAAGAGGAAA TGATGATTCCGAAAATGGCGGTTTCAAATTATGATAAGGAGCACGCACCTTACATCGATGCAACCGGAGCCCACGCCGGA GCTCTGCTTGGTGATGTCAGGCACGACCCGTTCCAGTCCGGAGGGCTTGAGACCCCTGCACATGACAGGGTAGAAGCCGG AGACATTCACAAAGCCCACAAAGGTGTGCTTTTCATTGACGAAATCAACACTCTCAGGCTTGAGTCACAGCAGAGCCTCC TGACCGCGCTTCAGGAAAAGGAATACCCGATTACCGGGCAGTCCGAAAGAAGCTCCGGAGCTCTTGTTAAGACCGAGCCT GTACCCTGTGACTTTATTATGGTCTCTGCAGGGAACCTGGACGCTGTTCAGAAAATGCACCCCGCACTCAGGTCAAGGAT AAAAGGTTACGGGTATGAAGTCTACATGCGGGACTCCATGGAAGACACACATGAAAACCGGAAGAAACTTGTCCGCTTCG TTGCCCAGGAAGTCATGAGAGACGGTCACATCCCTCACTTTGACGAGGGAGCTGTAGAAGAAGTGATAAGGGAAGCTAGA AGGCGTGCAGGCAGGAAAGGCCACCTTACCCTCAAACTCCGTGACCTCGGAGGGCTTGTGCGTGTTGCAGGCGATATTGC CCACTCCGAAGGCGCTCCGCTTACAACTTCCGAGCATGTTCTTGCGGCAAAGAGGATTGCAAGGTCCATAGAACAGCAGC TTGCAGACAGCTACCTCGAACAGCGCAAGGAATATGAGTCTTTCCTCAGGAAAGGTTCCGCTGTCGGAAGAGTCAACGGG CTTGCAGTTATGGGCGGAGATTCGGGAATCGTACTTCCGATTGTATCCGAAGTCACCCCTGCCCTTTCCGGAGCAGAGGG GCGAATTATTGCTACAGGTAAACTCAAGACTATTGCAAAAGAAGCTGTGCAGAACGTATCCGCAGTTATCAAGAATATGA CAGGCACGGATGTCTCGCGCCATGATGTCCACATTCAGTTTGTTGGGACATATGAAGGTGTGGAAGGAGACAGTGCATCG GTTTCCATAGCAACTGCAGTAATTTCTGCCATTGAAAAGATTCCTGTGGATCAGACTGTCGCAATGACCGGTTCTCTTTC TGTAAGGGGAGATGTCCTGCCTGTTGGCGGTGTCACCTACAAGATCGAGGCAGCAGCCCAGGCCGGCATGAAGAAAGTCA TCATACCCAAAGCCAACGAGGCAGATGTTCTTGTTGAAAAGGCATACAGGGAAAAGATCCAGATCATTCCTGTTTCCTCA ATAGCCGAAGTAATGGAACACAGCCTTGTGGGTCCGAGAAAGAATACAATTATTGAAAAACTCAAAAATATTACAAAACT AAGTTTCGACATCCCGGAAGTATCACCCGCTTCCGTACAGGCTATTAATCTCTTCGGGTGCAGGAACTGA
Upstream 100 bases:
>100_bases CCGTTATTCTACTCAGATTTATTGTTTTTTCAAAAGCGTCAAGTATATAATCTCGATCAGATAACGTCTATCAAATAACG TTCGAATATGTGAGCTAACC
Downstream 100 bases:
>100_bases TCATGAATAGTATTATGCAGGACATTAAATTTTATGACTGCAGGGTGATAGAAGGCAGTTCCACTTCTATCGTCCTGGAT AACGGAAAGATAGAAGAAAT
Product: ATP-dependent protease Lon
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MVYNNNQNIDGSSENMDRQAHKMEEPVPKVDPSAADQTKDEPNKVMAESELHEDIDEDVDIGFQFEDTSNIEVPKLLIDQ VLGQEHAVEVVRKAASQRRHIMMIGTPGTGKSLLAKAMAELLPKEELKDILVYPNLEDLNNPKIREVPAGKGREIVMAHK MEARKKAQARNMLMMLFVVGIIIYSYFVSQLLWGIIAGILILMLTRQFLPKEEMMIPKMAVSNYDKEHAPYIDATGAHAG ALLGDVRHDPFQSGGLETPAHDRVEAGDIHKAHKGVLFIDEINTLRLESQQSLLTALQEKEYPITGQSERSSGALVKTEP VPCDFIMVSAGNLDAVQKMHPALRSRIKGYGYEVYMRDSMEDTHENRKKLVRFVAQEVMRDGHIPHFDEGAVEEVIREAR RRAGRKGHLTLKLRDLGGLVRVAGDIAHSEGAPLTTSEHVLAAKRIARSIEQQLADSYLEQRKEYESFLRKGSAVGRVNG LAVMGGDSGIVLPIVSEVTPALSGAEGRIIATGKLKTIAKEAVQNVSAVIKNMTGTDVSRHDVHIQFVGTYEGVEGDSAS VSIATAVISAIEKIPVDQTVAMTGSLSVRGDVLPVGGVTYKIEAAAQAGMKKVIIPKANEADVLVEKAYREKIQIIPVSS IAEVMEHSLVGPRKNTIIEKLKNITKLSFDIPEVSPASVQAINLFGCRN
Sequences:
>Translated_689_residues MVYNNNQNIDGSSENMDRQAHKMEEPVPKVDPSAADQTKDEPNKVMAESELHEDIDEDVDIGFQFEDTSNIEVPKLLIDQ VLGQEHAVEVVRKAASQRRHIMMIGTPGTGKSLLAKAMAELLPKEELKDILVYPNLEDLNNPKIREVPAGKGREIVMAHK MEARKKAQARNMLMMLFVVGIIIYSYFVSQLLWGIIAGILILMLTRQFLPKEEMMIPKMAVSNYDKEHAPYIDATGAHAG ALLGDVRHDPFQSGGLETPAHDRVEAGDIHKAHKGVLFIDEINTLRLESQQSLLTALQEKEYPITGQSERSSGALVKTEP VPCDFIMVSAGNLDAVQKMHPALRSRIKGYGYEVYMRDSMEDTHENRKKLVRFVAQEVMRDGHIPHFDEGAVEEVIREAR RRAGRKGHLTLKLRDLGGLVRVAGDIAHSEGAPLTTSEHVLAAKRIARSIEQQLADSYLEQRKEYESFLRKGSAVGRVNG LAVMGGDSGIVLPIVSEVTPALSGAEGRIIATGKLKTIAKEAVQNVSAVIKNMTGTDVSRHDVHIQFVGTYEGVEGDSAS VSIATAVISAIEKIPVDQTVAMTGSLSVRGDVLPVGGVTYKIEAAAQAGMKKVIIPKANEADVLVEKAYREKIQIIPVSS IAEVMEHSLVGPRKNTIIEKLKNITKLSFDIPEVSPASVQAINLFGCRN >Mature_689_residues MVYNNNQNIDGSSENMDRQAHKMEEPVPKVDPSAADQTKDEPNKVMAESELHEDIDEDVDIGFQFEDTSNIEVPKLLIDQ VLGQEHAVEVVRKAASQRRHIMMIGTPGTGKSLLAKAMAELLPKEELKDILVYPNLEDLNNPKIREVPAGKGREIVMAHK MEARKKAQARNMLMMLFVVGIIIYSYFVSQLLWGIIAGILILMLTRQFLPKEEMMIPKMAVSNYDKEHAPYIDATGAHAG ALLGDVRHDPFQSGGLETPAHDRVEAGDIHKAHKGVLFIDEINTLRLESQQSLLTALQEKEYPITGQSERSSGALVKTEP VPCDFIMVSAGNLDAVQKMHPALRSRIKGYGYEVYMRDSMEDTHENRKKLVRFVAQEVMRDGHIPHFDEGAVEEVIREAR RRAGRKGHLTLKLRDLGGLVRVAGDIAHSEGAPLTTSEHVLAAKRIARSIEQQLADSYLEQRKEYESFLRKGSAVGRVNG LAVMGGDSGIVLPIVSEVTPALSGAEGRIIATGKLKTIAKEAVQNVSAVIKNMTGTDVSRHDVHIQFVGTYEGVEGDSAS VSIATAVISAIEKIPVDQTVAMTGSLSVRGDVLPVGGVTYKIEAAAQAGMKKVIIPKANEADVLVEKAYREKIQIIPVSS IAEVMEHSLVGPRKNTIIEKLKNITKLSFDIPEVSPASVQAINLFGCRN
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Degrades polypeptides processively [H]
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family. Archaeal LonB subfamily [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=159, Percent_Identity=32.7044025157233, Blast_Score=78, Evalue=3e-14, Organism=Escherichia coli, GI1786643, Length=277, Percent_Identity=27.7978339350181, Blast_Score=83, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17556486, Length=398, Percent_Identity=25.3768844221106, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17505831, Length=181, Percent_Identity=29.8342541436464, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI221513036, Length=165, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI24666867, Length=165, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR000523 - InterPro: IPR004663 - InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 - InterPro: IPR002078 [H]
Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase; PF00158 Sigma54_activat [H]
EC number: 3.4.21.-
Molecular weight: Translated: 75602; Mature: 75602
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYNNNQNIDGSSENMDRQAHKMEEPVPKVDPSAADQTKDEPNKVMAESELHEDIDEDVD CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC IGFQFEDTSNIEVPKLLIDQVLGQEHAVEVVRKAASQRRHIMMIGTPGTGKSLLAKAMAE CCEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH LLPKEELKDILVYPNLEDLNNPKIREVPAGKGREIVMAHKMEARKKAQARNMLMMLFVVG HCCHHHHHHEEECCCHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH IIIYSYFVSQLLWGIIAGILILMLTRQFLPKEEMMIPKMAVSNYDKEHAPYIDATGAHAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCCCCCCCHHH ALLGDVRHDPFQSGGLETPAHDRVEAGDIHKAHKGVLFIDEINTLRLESQQSLLTALQEK HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCHHEEHHHHHHHHHHHHC EYPITGQSERSSGALVKTEPVPCDFIMVSAGNLDAVQKMHPALRSRIKGYGYEVYMRDSM CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCH EDTHENRKKLVRFVAQEVMRDGHIPHFDEGAVEEVIREARRRAGRKGHLTLKLRDLGGLV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH RVAGDIAHSEGAPLTTSEHVLAAKRIARSIEQQLADSYLEQRKEYESFLRKGSAVGRVNG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LAVMGGDSGIVLPIVSEVTPALSGAEGRIIATGKLKTIAKEAVQNVSAVIKNMTGTDVSR EEEECCCCCEEEEEHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC HDVHIQFVGTYEGVEGDSASVSIATAVISAIEKIPVDQTVAMTGSLSVRGDVLPVGGVTY CEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCEEEECCEEE KIEAAAQAGMKKVIIPKANEADVLVEKAYREKIQIIPVSSIAEVMEHSLVGPRKNTIIEK EEEHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCHHHHHHH LKNITKLSFDIPEVSPASVQAINLFGCRN HHHHHEEECCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MVYNNNQNIDGSSENMDRQAHKMEEPVPKVDPSAADQTKDEPNKVMAESELHEDIDEDVD CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC IGFQFEDTSNIEVPKLLIDQVLGQEHAVEVVRKAASQRRHIMMIGTPGTGKSLLAKAMAE CCEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH LLPKEELKDILVYPNLEDLNNPKIREVPAGKGREIVMAHKMEARKKAQARNMLMMLFVVG HCCHHHHHHEEECCCHHHCCCCCEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH IIIYSYFVSQLLWGIIAGILILMLTRQFLPKEEMMIPKMAVSNYDKEHAPYIDATGAHAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCCCCCCCHHH ALLGDVRHDPFQSGGLETPAHDRVEAGDIHKAHKGVLFIDEINTLRLESQQSLLTALQEK HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCHHEEHHHHHHHHHHHHC EYPITGQSERSSGALVKTEPVPCDFIMVSAGNLDAVQKMHPALRSRIKGYGYEVYMRDSM CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCH EDTHENRKKLVRFVAQEVMRDGHIPHFDEGAVEEVIREARRRAGRKGHLTLKLRDLGGLV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH RVAGDIAHSEGAPLTTSEHVLAAKRIARSIEQQLADSYLEQRKEYESFLRKGSAVGRVNG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LAVMGGDSGIVLPIVSEVTPALSGAEGRIIATGKLKTIAKEAVQNVSAVIKNMTGTDVSR EEEECCCCCEEEEEHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCC HDVHIQFVGTYEGVEGDSASVSIATAVISAIEKIPVDQTVAMTGSLSVRGDVLPVGGVTY CEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCEEEECCEEE KIEAAAQAGMKKVIIPKANEADVLVEKAYREKIQIIPVSSIAEVMEHSLVGPRKNTIIEK EEEHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCCHHHHHHH LKNITKLSFDIPEVSPASVQAINLFGCRN HHHHHEEECCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]