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The map label for this gene is dppB [H]

Identifier: 21226106

GI number: 21226106

Start: 4615

End: 5607

Strand: Direct

Name: dppB [H]

Synonym: MM_0004

Alternate gene names: 21226106

Gene position: 4615-5607 (Clockwise)

Preceding gene: 21226105

Following gene: 21226107

Centisome position: 0.11

GC content: 44.31

Gene sequence:

>993_bases
GTGCCGGATACCGAAAAAATAGCGAGTTTTGCAGGAAAAAAAATACTCAGGCTGGTAAGTCTTCTTGCTGTAGTTTGTTT
TGTAAGTTTCATGCTTATTCAATACTCGCCCATAGACCCTGTTAGAGCCTATATAGGAGAAATGACAGTCAGTGAAGAGC
ATAAAGCCAAACTTGAAGAATATTGGGGAGTCAATACTCCTCCGCAGGAAAAATTCCTGAACTGGGCAGGAAATATTCTC
AAAGGGGATTTTGGGGTATCATTGATTTACCGGATGCCTGTTGCCGATGTGATTAAAGAAAGAGCTATGGCCTCTTTTGT
CCTTATGGCAACTTCATGGCTGTTTTCAGGAGTGCTGGGCTTCATCCTGGGCATAGTGGCAGGAATGAATAAGGGCACAT
GGATTGACAGAGCAATAAAAACTTACTGTTACGTGCTGGCAGCCACCCCGACATTCTGGCTGGCACTGGTTCTGCTAATG
GTATTTTCTGTAAGTCTGGGGTGGTTCCCGATAGGCCTGAGTGTACCCATAGGGGTTACGGCTGAAAATGTAACTTTTTT
TGACCGGATACAGCATTTAATTCTCCCTGCATTGACCCTGAGTTTACTGGGAGTAGCCCAGATTGCAATGTTTACCCGGG
AAAAACTAATCGAAGTTCTTTCCAGCGATTATGTGTTATTCGCAAAAGCAAGAGGTGAAAAAGGGCTGGACCTGGTATTA
AGACATGGGATAAGAAACGTTGCACTTCCTGCAATTACTCTGCAATTTTTAGGGTTCAGCGAATTGTTCGGAGGAGCAGT
TCTTGTTGAGCAGGTATTCTCCTATCCTGGAATCGGACAGGCAGCAGTAGCAGCAGGGTTGAGATCTGATGTGCCTCTGC
TTTTAGGGGTAGTCATTTTCAGTGCTATATTTGTCTTTTGCGGAAACCTGATTGCTGACACTATTTACGAATTCGTTGAC
CCCAGAATAAAACAGCAGGAGGCAACAGTATGA

Upstream 100 bases:

>100_bases
TATTTCAACCTTTGGATAAGAATATTAATTGAAATAATAACAAATATTGCAATAATCCTGAAGTAAGTTTATTATCAAGT
AACAATAATGAGGGAAGAGT

Downstream 100 bases:

>100_bases
ACATTATAGAGGAGGCTGGATTATGAGCACTGCTGTTGTAACAGCTAACAAAGGAGTATTCCGGGGACTGAACCTGAGAC
AGAAGACCCTGCTGATTATA

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MPDTEKIASFAGKKILRLVSLLAVVCFVSFMLIQYSPIDPVRAYIGEMTVSEEHKAKLEEYWGVNTPPQEKFLNWAGNIL
KGDFGVSLIYRMPVADVIKERAMASFVLMATSWLFSGVLGFILGIVAGMNKGTWIDRAIKTYCYVLAATPTFWLALVLLM
VFSVSLGWFPIGLSVPIGVTAENVTFFDRIQHLILPALTLSLLGVAQIAMFTREKLIEVLSSDYVLFAKARGEKGLDLVL
RHGIRNVALPAITLQFLGFSELFGGAVLVEQVFSYPGIGQAAVAAGLRSDVPLLLGVVIFSAIFVFCGNLIADTIYEFVD
PRIKQQEATV

Sequences:

>Translated_330_residues
MPDTEKIASFAGKKILRLVSLLAVVCFVSFMLIQYSPIDPVRAYIGEMTVSEEHKAKLEEYWGVNTPPQEKFLNWAGNIL
KGDFGVSLIYRMPVADVIKERAMASFVLMATSWLFSGVLGFILGIVAGMNKGTWIDRAIKTYCYVLAATPTFWLALVLLM
VFSVSLGWFPIGLSVPIGVTAENVTFFDRIQHLILPALTLSLLGVAQIAMFTREKLIEVLSSDYVLFAKARGEKGLDLVL
RHGIRNVALPAITLQFLGFSELFGGAVLVEQVFSYPGIGQAAVAAGLRSDVPLLLGVVIFSAIFVFCGNLIADTIYEFVD
PRIKQQEATV
>Mature_329_residues
PDTEKIASFAGKKILRLVSLLAVVCFVSFMLIQYSPIDPVRAYIGEMTVSEEHKAKLEEYWGVNTPPQEKFLNWAGNILK
GDFGVSLIYRMPVADVIKERAMASFVLMATSWLFSGVLGFILGIVAGMNKGTWIDRAIKTYCYVLAATPTFWLALVLLMV
FSVSLGWFPIGLSVPIGVTAENVTFFDRIQHLILPALTLSLLGVAQIAMFTREKLIEVLSSDYVLFAKARGEKGLDLVLR
HGIRNVALPAITLQFLGFSELFGGAVLVEQVFSYPGIGQAAVAAGLRSDVPLLLGVVIFSAIFVFCGNLIADTIYEFVDP
RIKQQEATV

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=318, Percent_Identity=34.2767295597484, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1789965, Length=321, Percent_Identity=28.3489096573209, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=28.0757097791798, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=27.6729559748428, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=29.483282674772, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=28.7822878228782, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788504, Length=293, Percent_Identity=25.938566552901, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36225; Mature: 36094

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTEKIASFAGKKILRLVSLLAVVCFVSFMLIQYSPIDPVRAYIGEMTVSEEHKAKLEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
YWGVNTPPQEKFLNWAGNILKGDFGVSLIYRMPVADVIKERAMASFVLMATSWLFSGVLG
HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FILGIVAGMNKGTWIDRAIKTYCYVLAATPTFWLALVLLMVFSVSLGWFPIGLSVPIGVT
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
AENVTFFDRIQHLILPALTLSLLGVAQIAMFTREKLIEVLSSDYVLFAKARGEKGLDLVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
RHGIRNVALPAITLQFLGFSELFGGAVLVEQVFSYPGIGQAAVAAGLRSDVPLLLGVVIF
HHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
SAIFVFCGNLIADTIYEFVDPRIKQQEATV
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
PDTEKIASFAGKKILRLVSLLAVVCFVSFMLIQYSPIDPVRAYIGEMTVSEEHKAKLEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
YWGVNTPPQEKFLNWAGNILKGDFGVSLIYRMPVADVIKERAMASFVLMATSWLFSGVLG
HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FILGIVAGMNKGTWIDRAIKTYCYVLAATPTFWLALVLLMVFSVSLGWFPIGLSVPIGVT
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
AENVTFFDRIQHLILPALTLSLLGVAQIAMFTREKLIEVLSSDYVLFAKARGEKGLDLVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
RHGIRNVALPAITLQFLGFSELFGGAVLVEQVFSYPGIGQAAVAAGLRSDVPLLLGVVIF
HHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
SAIFVFCGNLIADTIYEFVDPRIKQQEATV
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]