| Definition | Thermoanaerobacter tengcongensis MB4, complete genome. |
|---|---|
| Accession | NC_003869 |
| Length | 2,689,445 |
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The map label for this gene is DppD3 [H]
Identifier: 20806870
GI number: 20806870
Start: 378347
End: 379309
Strand: Direct
Name: DppD3 [H]
Synonym: TTE0353
Alternate gene names: 20806870
Gene position: 378347-379309 (Clockwise)
Preceding gene: 20806869
Following gene: 20806871
Centisome position: 14.07
GC content: 38.63
Gene sequence:
>963_bases GTGACCAATTTGGTAGAGATAAAGGGTTTGAAAATATATTATAAAACTTTGCGCGGAGACGCTAAAGCATTAGACGACGT GACTTTTACGATAAATGACAGAGAAATACTGGGGATAGCTGGCGAATCAGGATGTGGCAAGTCGACCCTGGGGAATTCCT TGATCCTTTTAAAGCCACCAATGAAATACGTCTCTGGTGAGGTTAGACTAAATGGCGAGAGATTACCGATTGACAATACT GTTGAGATGAGAAAATATCGCTATAAAAAAATTTCTCTTATACCCCAGTATGCTATGGATGCTTTAAATCCAACTCGTAA AATAGGGGGAATAATAAAGGATTTGGTTGGTCAGCATAGGGTAAAATACGAGGAGATAGAAGGAAGGCTACATGAAAGGC TTAGAATGGTTAAATTATCTAAAGATATACTTAATATGTACCCTTTTGAGCTATCAGGTGGAATGAAGCAAAGGTTAGTT TTAGTAATATCTACTTTGTTAAATCCAGACCTTTTGATAGCAGATGAAGTCACTTCTGCGCTGGATGTTTCTTCACAGAA AGCAGTTTCTCTCATGTTTAAAGAATTTAGGGATGAAAAGATTGTAAATTCTATAGTTTTTATTACTCACGACATAGCGG TTTTGTATCAAATAGCGGACAGGATAGCTATAATGTACGCAGGTAAAGTAGTGGAGATTGGTCCTACGGAAGAGATAATG AAAAATCCTCTCCATCCGTATACAAAGGCTTTAATTAAATCTTTGCCAAATGCGGGGATTAGACATACACATCAAAAGTT AGAGGGAATTCCTGGTCATCCCCCTAATCTTATAAACCCACCGGAAGGTTGCAGATTTAAAGATAGGTGTCCTTTTGCCA GTGACGAGTGTTTAAATGAACCGCCACTTGTGGAAGTTGAACCAGGGAGATACGTTGCTTGTTGGAAGGTGAAGGGAAGA TGA
Upstream 100 bases:
>100_bases GGTTTATTCCTCCGGGGTTGGCAATAACGATGATAGTAAGTTCGCTGTACTTTCTCAATATAGGCCTTGATGAGATATTC AATCCAAGGCTTAGGGAGGA
Downstream 100 bases:
>100_bases TTAGGGTAGAAAATCTCACAAAGGTATTTACTTCAGGAGGGATATTTTCTAAAAACACAATAGTGGCAGTAGATGGAGTA GATTTTGAAATAAAAAAAGC
Product: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Products: NA
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MTNLVEIKGLKIYYKTLRGDAKALDDVTFTINDREILGIAGESGCGKSTLGNSLILLKPPMKYVSGEVRLNGERLPIDNT VEMRKYRYKKISLIPQYAMDALNPTRKIGGIIKDLVGQHRVKYEEIEGRLHERLRMVKLSKDILNMYPFELSGGMKQRLV LVISTLLNPDLLIADEVTSALDVSSQKAVSLMFKEFRDEKIVNSIVFITHDIAVLYQIADRIAIMYAGKVVEIGPTEEIM KNPLHPYTKALIKSLPNAGIRHTHQKLEGIPGHPPNLINPPEGCRFKDRCPFASDECLNEPPLVEVEPGRYVACWKVKGR
Sequences:
>Translated_320_residues MTNLVEIKGLKIYYKTLRGDAKALDDVTFTINDREILGIAGESGCGKSTLGNSLILLKPPMKYVSGEVRLNGERLPIDNT VEMRKYRYKKISLIPQYAMDALNPTRKIGGIIKDLVGQHRVKYEEIEGRLHERLRMVKLSKDILNMYPFELSGGMKQRLV LVISTLLNPDLLIADEVTSALDVSSQKAVSLMFKEFRDEKIVNSIVFITHDIAVLYQIADRIAIMYAGKVVEIGPTEEIM KNPLHPYTKALIKSLPNAGIRHTHQKLEGIPGHPPNLINPPEGCRFKDRCPFASDECLNEPPLVEVEPGRYVACWKVKGR >Mature_319_residues TNLVEIKGLKIYYKTLRGDAKALDDVTFTINDREILGIAGESGCGKSTLGNSLILLKPPMKYVSGEVRLNGERLPIDNTV EMRKYRYKKISLIPQYAMDALNPTRKIGGIIKDLVGQHRVKYEEIEGRLHERLRMVKLSKDILNMYPFELSGGMKQRLVL VISTLLNPDLLIADEVTSALDVSSQKAVSLMFKEFRDEKIVNSIVFITHDIAVLYQIADRIAIMYAGKVVEIGPTEEIMK NPLHPYTKALIKSLPNAGIRHTHQKLEGIPGHPPNLINPPEGCRFKDRCPFASDECLNEPPLVEVEPGRYVACWKVKGR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536378, Length=225, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=257, Percent_Identity=26.0700389105058, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27262624, Length=237, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI27262626, Length=237, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=24.7747747747748, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=36.1635220125786, Blast_Score=214, Evalue=8e-57, Organism=Escherichia coli, GI48994883, Length=317, Percent_Identity=36.5930599369085, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI1787500, Length=329, Percent_Identity=37.6899696048632, Blast_Score=192, Evalue=2e-50, Organism=Escherichia coli, GI1789962, Length=297, Percent_Identity=35.016835016835, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=31.7757009345794, Blast_Score=173, Evalue=1e-44, Organism=Escherichia coli, GI1787548, Length=321, Percent_Identity=31.7757009345794, Blast_Score=162, Evalue=4e-41, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=3e-37, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=33.955223880597, Blast_Score=148, Evalue=4e-37, Organism=Escherichia coli, GI1787758, Length=307, Percent_Identity=30.2931596091205, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=31.3559322033898, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=31.2977099236641, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=35.1464435146443, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1789891, Length=237, Percent_Identity=30.8016877637131, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=29.296875, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI87081791, Length=287, Percent_Identity=32.404181184669, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789890, Length=231, Percent_Identity=29.8701298701299, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=26.5560165975104, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=24, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1790162, Length=257, Percent_Identity=24.9027237354086, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=258, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787370, Length=255, Percent_Identity=29.0196078431373, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=25.8196721311475, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=29.8701298701299, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=30.9090909090909, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1788225, Length=260, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=24.8, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994943, Length=254, Percent_Identity=30.7086614173228, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=27.4590163934426, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=28.0701754385965, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787712, Length=262, Percent_Identity=23.6641221374046, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=30.5, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787105, Length=251, Percent_Identity=26.2948207171315, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=27.1111111111111, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=23.2365145228216, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=216, Percent_Identity=24.0740740740741, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786319, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=25.6637168141593, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786872, Length=246, Percent_Identity=24.7967479674797, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=29.7872340425532, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=252, Percent_Identity=25.7936507936508, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=28.125, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1788644, Length=107, Percent_Identity=28.9719626168224, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1789672, Length=252, Percent_Identity=24.2063492063492, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17565938, Length=257, Percent_Identity=27.6264591439689, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193211015, Length=274, Percent_Identity=26.2773722627737, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=274, Percent_Identity=26.2773722627737, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211017, Length=274, Percent_Identity=26.2773722627737, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202349, Length=253, Percent_Identity=28.0632411067194, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17543740, Length=258, Percent_Identity=25.968992248062, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17511077, Length=265, Percent_Identity=26.0377358490566, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=246, Percent_Identity=24.390243902439, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569143, Length=242, Percent_Identity=26.8595041322314, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=262, Percent_Identity=25.1908396946565, Blast_Score=70, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574533, Length=224, Percent_Identity=30.3571428571429, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI116007328, Length=246, Percent_Identity=28.0487804878049, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI28574150, Length=246, Percent_Identity=28.0487804878049, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24659289, Length=244, Percent_Identity=25.4098360655738, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=28.1818181818182, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36022; Mature: 35891
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLVEIKGLKIYYKTLRGDAKALDDVTFTINDREILGIAGESGCGKSTLGNSLILLKPP CCCCEEECCCEEEEEHHCCCHHHHCCEEEEECCCEEEEECCCCCCCCHHHCCEEEEECCC MKYVSGEVRLNGERLPIDNTVEMRKYRYKKISLIPQYAMDALNPTRKIGGIIKDLVGQHR HHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHC VKYEEIEGRLHERLRMVKLSKDILNMYPFELSGGMKQRLVLVISTLLNPDLLIADEVTSA CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHH LDVSSQKAVSLMFKEFRDEKIVNSIVFITHDIAVLYQIADRIAIMYAGKVVEIGPTEEIM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCHHHHH KNPLHPYTKALIKSLPNAGIRHTHQKLEGIPGHPPNLINPPEGCRFKDRCPFASDECLNE HCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC PPLVEVEPGRYVACWKVKGR CCEEEECCCCEEEEEEECCC >Mature Secondary Structure TNLVEIKGLKIYYKTLRGDAKALDDVTFTINDREILGIAGESGCGKSTLGNSLILLKPP CCCEEECCCEEEEEHHCCCHHHHCCEEEEECCCEEEEECCCCCCCCHHHCCEEEEECCC MKYVSGEVRLNGERLPIDNTVEMRKYRYKKISLIPQYAMDALNPTRKIGGIIKDLVGQHR HHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHC VKYEEIEGRLHERLRMVKLSKDILNMYPFELSGGMKQRLVLVISTLLNPDLLIADEVTSA CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHH LDVSSQKAVSLMFKEFRDEKIVNSIVFITHDIAVLYQIADRIAIMYAGKVVEIGPTEEIM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEECCHHHHH KNPLHPYTKALIKSLPNAGIRHTHQKLEGIPGHPPNLINPPEGCRFKDRCPFASDECLNE HCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC PPLVEVEPGRYVACWKVKGR CCEEEECCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]