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The map label for this gene is yjjV [C]

Identifier: 20093971

GI number: 20093971

Start: 497572

End: 498342

Strand: Direct

Name: yjjV [C]

Synonym: MK0533

Alternate gene names: 20093971

Gene position: 497572-498342 (Clockwise)

Preceding gene: 20093970

Following gene: 20093972

Centisome position: 29.36

GC content: 59.79

Gene sequence:

>771_bases
TTGAGGTACGTCGACGCACATGTGCACCTCGACGTTAGGAGTTACGAAGACCTCGAGAGAATGGCCTTATCTGGAGTCCG
AACCGTCGTCACGTGCGCTCACGATCCTTACCCCGACATGACGGCCGAGGTGTACTCCGCCCTCTTCAGAAGGCTCCTCG
GGGTGGAAACGTGGAGGGGCGAAAAGGCCGGGCTCACGGTTAAGGTGGCCGTGGGAGTACATCCCGGAGGCGTACCGGAT
AACATGAGCGACGTGCTACGGGAAGTCGAGGAACTCCTGAGTCATGAGGACGTCGTCGCGATCGGAGAGACCGGCCTCAA
CGAAAATCCGGATGATAGAGAAATCCAAGTCCTGGAGGCTCAGCTGAAGTTAGCCCGAGAGCACGAGGTACCCATCATTG
TCCACACGCCGAGCAGGAACAAGGTCGAGATCACCGAGAAGGTGTTGGAGATCCTGAACTCTTCGGGTATAGACCCCTCT
CTGGTGCTGGTGGACCACGCCTCGGCGGAGACCGTCTCGCTCATCGGTGAGGAAGGGTACGCGGTCGGGCTGACACTCCG
ACCGGGAGAGCTCGATGTGTGGGAAGCGTGTGATATCGTGGAGGAGTACGCCGACGAAATGACGCTCATCGCGAGCAGCG
ACCTGGGATCTCTAGCCGCCGATCCACTCGCCCTCCCCAAGCTGGCCCTCGAACTGGAACGCCGGAACGTCGAGAAGAGC
ATCATCCGGGACGTCGTAGCCCGGAACGCTGAGAGGTTTTACGGGCTCTAA

Upstream 100 bases:

>100_bases
GCTCAAAGCGGCCCTCGAAAAGCTGAAGGAGTAACTTCCAAGCGCCCCCTTCGACGCCCTCGCTCAATCGTCATGACATC
CGAAACGATGGGGTGGGCCT

Downstream 100 bases:

>100_bases
CTTCCGCCCTAAAGCACGATGTTCGAGGCAGCCTCGGTCCCCGTCCTCTATTCGTGGATCATGTAGGCGGGTGATCAGGC
CGGTCAGAGCGACCCCATCT

Product: metal-dependent hydrolase of the TIM-barrel fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MRYVDAHVHLDVRSYEDLERMALSGVRTVVTCAHDPYPDMTAEVYSALFRRLLGVETWRGEKAGLTVKVAVGVHPGGVPD
NMSDVLREVEELLSHEDVVAIGETGLNENPDDREIQVLEAQLKLAREHEVPIIVHTPSRNKVEITEKVLEILNSSGIDPS
LVLVDHASAETVSLIGEEGYAVGLTLRPGELDVWEACDIVEEYADEMTLIASSDLGSLAADPLALPKLALELERRNVEKS
IIRDVVARNAERFYGL

Sequences:

>Translated_256_residues
MRYVDAHVHLDVRSYEDLERMALSGVRTVVTCAHDPYPDMTAEVYSALFRRLLGVETWRGEKAGLTVKVAVGVHPGGVPD
NMSDVLREVEELLSHEDVVAIGETGLNENPDDREIQVLEAQLKLAREHEVPIIVHTPSRNKVEITEKVLEILNSSGIDPS
LVLVDHASAETVSLIGEEGYAVGLTLRPGELDVWEACDIVEEYADEMTLIASSDLGSLAADPLALPKLALELERRNVEKS
IIRDVVARNAERFYGL
>Mature_256_residues
MRYVDAHVHLDVRSYEDLERMALSGVRTVVTCAHDPYPDMTAEVYSALFRRLLGVETWRGEKAGLTVKVAVGVHPGGVPD
NMSDVLREVEELLSHEDVVAIGETGLNENPDDREIQVLEAQLKLAREHEVPIIVHTPSRNKVEITEKVLEILNSSGIDPS
LVLVDHASAETVSLIGEEGYAVGLTLRPGELDVWEACDIVEEYADEMTLIASSDLGSLAADPLALPKLALELERRNVEKS
IIRDVVARNAERFYGL

Specific function: Unknown

COG id: COG1099

COG function: function code R; Predicted metal-dependent hydrolases with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012022 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28241; Mature: 28241

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYVDAHVHLDVRSYEDLERMALSGVRTVVTCAHDPYPDMTAEVYSALFRRLLGVETWRG
CCEEEEEEEEECHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
EKAGLTVKVAVGVHPGGVPDNMSDVLREVEELLSHEDVVAIGETGLNENPDDREIQVLEA
CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
QLKLAREHEVPIIVHTPSRNKVEITEKVLEILNSSGIDPSLVLVDHASAETVSLIGEEGY
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCE
AVGLTLRPGELDVWEACDIVEEYADEMTLIASSDLGSLAADPLALPKLALELERRNVEKS
EEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHH
IIRDVVARNAERFYGL
HHHHHHHCCHHHHCCC
>Mature Secondary Structure
MRYVDAHVHLDVRSYEDLERMALSGVRTVVTCAHDPYPDMTAEVYSALFRRLLGVETWRG
CCEEEEEEEEECHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
EKAGLTVKVAVGVHPGGVPDNMSDVLREVEELLSHEDVVAIGETGLNENPDDREIQVLEA
CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
QLKLAREHEVPIIVHTPSRNKVEITEKVLEILNSSGIDPSLVLVDHASAETVSLIGEEGY
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCE
AVGLTLRPGELDVWEACDIVEEYADEMTLIASSDLGSLAADPLALPKLALELERRNVEKS
EEEEEECCCCCCHHHHHHHHHHHHHHEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHH
IIRDVVARNAERFYGL
HHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]