Definition | Pyrococcus furiosus DSM 3638, complete genome. |
---|---|
Accession | NC_003413 |
Length | 1,908,256 |
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The map label for this gene is psmB2
Identifier: 18977776
GI number: 18977776
Start: 1317828
End: 1318448
Strand: Direct
Name: psmB2
Synonym: PF1404
Alternate gene names: 18977776
Gene position: 1317828-1318448 (Clockwise)
Preceding gene: 18977775
Following gene: 18977777
Centisome position: 69.06
GC content: 41.22
Gene sequence:
>621_bases GTGTTGCACTTGAAAGAGAAACTTAAGGGAACAACTACAGTAGGCCTAGTTTGTAAGGAAGGAGTAGTACTTGCAGCAGA TACAAGAGCTAGCCTAGGAAACATTATCTACGCAAAGAACGTGACAAAGATTCACAAGATTGACGAGCATTTGGCAATTG CAGGGGCGGGAGACGTTGGAGATATACTCAACTTAGTTAGACTCTTAAAAGCCGAGGCAAACCTATACAAATCTACCGTA GGAAAAGAGATGAGCGTTAAGGCATTAGCAACCCTGCTTGCAAACATCTTGAACGGGTCAAAGTACTTCCCCTACTTGGG ATGGTTCTTGGTTGGAGGATACGATGAGAAACCCAGACTGTTTTCTGTTGACATGGTGGGGGGAATAACTGAAGATAACT ATGCCGCTGCAGGTTCTGGAATGGAATTTGCATACTCAATTTTAGATTCCGAATATAGAGAAGAAATGAGTGTAAATGAT GGTATCAAGTTAGCTGTAAAGGCAATTAATGTGGCAATAAAGAGAGATGTGTTCACAGGAGATGGATTGCTCGTTGTAAC GATAACAAAAGACGGATACAAAGAATACAGAGGAGCAGAACTAGAAAAAATGTTAAAGTAG
Upstream 100 bases:
>100_bases GGCATTCCATGAAGCGAAAGGTTTATATAAAAGTTTGTGCTTTATCCCAGCTGAGAAGTCTTTTTCTGTTCTAGCTCGCT CTGGGTAATATTCAAAAGGG
Downstream 100 bases:
>100_bases TCCAAGGAGGTGACAATTTTGATTAAAAGGGAAACCATGGTTGAAGAAATTCTTAAGGAGATAAGAGAAAAGGTAGCTCA AAAAATACCAAAAGAAGCAA
Product: proteasome, subunit beta (multicatalytic endopeptidase complex beta subunit)
Products: NA
Alternate protein names: 20S proteasome beta subunit 2; Proteasome core protein PsmB 2
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MLHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTV GKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVND GIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGAELEKMLK
Sequences:
>Translated_206_residues MLHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTV GKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVND GIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGAELEKMLK >Mature_206_residues MLHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTV GKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVND GIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGAELEKMLK
Specific function: Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation
COG id: COG0638
COG function: function code O; 20S proteasome, alpha and beta subunits
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase T1B family
Homologues:
Organism=Homo sapiens, GI4506193, Length=199, Percent_Identity=29.6482412060301, Blast_Score=104, Evalue=5e-23, Organism=Homo sapiens, GI73747875, Length=201, Percent_Identity=31.3432835820896, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI4758970, Length=201, Percent_Identity=31.3432835820896, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI4506201, Length=189, Percent_Identity=31.2169312169312, Blast_Score=90, Evalue=1e-18, Organism=Homo sapiens, GI4506191, Length=190, Percent_Identity=31.0526315789474, Blast_Score=87, Evalue=7e-18, Organism=Homo sapiens, GI153791216, Length=214, Percent_Identity=27.5700934579439, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4506203, Length=189, Percent_Identity=31.2169312169312, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI22538465, Length=177, Percent_Identity=27.1186440677966, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI23110942, Length=207, Percent_Identity=25.1207729468599, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI23110925, Length=207, Percent_Identity=25.1207729468599, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508495, Length=182, Percent_Identity=31.3186813186813, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17508499, Length=190, Percent_Identity=32.6315789473684, Blast_Score=83, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17554384, Length=192, Percent_Identity=26.5625, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17535357, Length=185, Percent_Identity=25.4054054054054, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17541700, Length=197, Percent_Identity=23.8578680203046, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508491, Length=169, Percent_Identity=30.1775147928994, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17508493, Length=166, Percent_Identity=25.9036144578313, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6325360, Length=186, Percent_Identity=29.5698924731183, Blast_Score=88, Evalue=7e-19, Organism=Saccharomyces cerevisiae, GI6324731, Length=186, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6320849, Length=187, Percent_Identity=26.7379679144385, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322459, Length=185, Percent_Identity=26.4864864864865, Blast_Score=72, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6321574, Length=185, Percent_Identity=25.9459459459459, Blast_Score=69, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6319430, Length=206, Percent_Identity=25.2427184466019, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24639979, Length=185, Percent_Identity=31.8918918918919, Blast_Score=94, Evalue=4e-20, Organism=Drosophila melanogaster, GI21355573, Length=185, Percent_Identity=33.5135135135135, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24652553, Length=185, Percent_Identity=33.5135135135135, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI20130281, Length=186, Percent_Identity=31.1827956989247, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24664391, Length=193, Percent_Identity=30.5699481865285, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI24584895, Length=172, Percent_Identity=31.9767441860465, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI17737605, Length=196, Percent_Identity=28.0612244897959, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI28573221, Length=187, Percent_Identity=28.3422459893048, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129563, Length=190, Percent_Identity=28.9473684210526, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24581176, Length=199, Percent_Identity=26.6331658291457, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653999, Length=185, Percent_Identity=25.9459459459459, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PSB2_PYRFU (Q8U125)
Other databases:
- EMBL: AE009950 - RefSeq: NP_579133.1 - ProteinModelPortal: Q8U125 - SMR: Q8U125 - MEROPS: T01.002 - EnsemblBacteria: EBPYRT00000005835 - GeneID: 1469280 - GenomeReviews: AE009950_GR - KEGG: pfu:PF1404 - NMPDR: fig|186497.1.peg.1451 - GeneTree: EBGT00050000022364 - HOGENOM: HBG499923 - OMA: MMWRRIL - ProtClustDB: CLSK253217 - BRENDA: 3.4.25.1 - GO: GO:0005737 - HAMAP: MF_02113_A - InterPro: IPR019983 - InterPro: IPR000243 - InterPro: IPR016050 - InterPro: IPR001353 - PRINTS: PR00141 - TIGRFAMs: TIGR03634
Pfam domain/function: PF00227 Proteasome
EC number: =3.4.25.1
Molecular weight: Translated: 22384; Mature: 22384
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00854 PROTEASOME_B_1; PS51476 PROTEASOME_B_2
Important sites: ACT_SITE 11-11
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVG CCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCHHHHHHHHHEEEECCCCHH DILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCE FSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTG EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECC DGLLVVTITKDGYKEYRGAELEKMLK CCEEEEEEECCCHHHHCCCHHHHHCC >Mature Secondary Structure MLHLKEKLKGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVG CCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCHHHHHHHHHEEEECCCCHH DILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPRL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCE FSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTG EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECC DGLLVVTITKDGYKEYRGAELEKMLK CCEEEEEEECCCHHHHCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA