| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ybbP [H]
Identifier: 18311333
GI number: 18311333
Start: 2710484
End: 2711341
Strand: Reverse
Name: ybbP [H]
Synonym: CPE2351
Alternate gene names: 18311333
Gene position: 2711341-2710484 (Counterclockwise)
Preceding gene: 18311336
Following gene: 18311332
Centisome position: 89.44
GC content: 28.09
Gene sequence:
>858_bases GTGCAAGAATTAATAATGATATTTACAAATAGTTTAAAGGATATATCTATTTGGTCCATCATAGATATATTAATTGTAGC TTTTATATTTTATAGGGGATATATATTAATAAAAGAAACAAGGGCAGAGCAATTATTAAAGGGAGTAATATTATTATTGA TTTTAATTCCTATAAGCTATGTTTTAAGACTTCAAATGTTGAATTTTATATTAACAAAAACATTAACCATAGGTGTTTTA TCAATAATTATTATTTTCCAACCAGAAATAAGAAGAGCACTAGAACATATAGGAAGTACTGCCTTTGATGATTTTCATGT TATTCAGGATGATCAAAAGTTAGAAGAAGTTATTGATCAACTTATAGTAGCAGTAGAGGATATGGCTGAAACTAAAACTG GTGCCTTAATAGCTATAGAGCAAGGGACAGGATTAGCAGAAATAATTTCTACGGGAACCCAATTAGATGCAGTAATAACT TCTGCATTAATAGAGAATATATTCTTTAAGAACACTCCATTACATGATGGAGCAACTATAATTAGAAATGATAGAATCGT TTCAGCAGGTTGTGTCTTACCATTAACAAATAATAATACTATAAATAAAAAACTTGGTACTAGACATAGAGCTGCTATAG GGTTATCTGAAATATCAGATGCTTTAGTTATTGTTGTTTCAGAAGAAACAGGAGCTATATCTTTAGCTGTAAAAGGTAGA TTAACAAGAAATTATGATGGTAAAAAATTAAAAAATATATTATTAAAAGTTATGAGAAATAGACGTGATAAGAGAGGGAA AACTTATGGAGAGAAGGTGAAAATATGCTTAAAAAAATTGAAGGAAAGAATTTCTTAG
Upstream 100 bases:
>100_bases ACCTAGAATATGTAAAACTGAAAAGAAATCATTTAAAATGTATCTTATAATTAGATTTTTATTGTATAATTTAATTGTTA CGGTAATGGAGGTGAAATTT
Downstream 100 bases:
>100_bases TAAAATTTATATGCTTATTATTATCCTTTTCTCTTTGGCTATATATAATAAATGTAGAAAATCCAGTGAGAGAGCTTAAA TTAAATAACGTGCCAGTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MQELIMIFTNSLKDISIWSIIDILIVAFIFYRGYILIKETRAEQLLKGVILLLILIPISYVLRLQMLNFILTKTLTIGVL SIIIIFQPEIRRALEHIGSTAFDDFHVIQDDQKLEEVIDQLIVAVEDMAETKTGALIAIEQGTGLAEIISTGTQLDAVIT SALIENIFFKNTPLHDGATIIRNDRIVSAGCVLPLTNNNTINKKLGTRHRAAIGLSEISDALVIVVSEETGAISLAVKGR LTRNYDGKKLKNILLKVMRNRRDKRGKTYGEKVKICLKKLKERIS
Sequences:
>Translated_285_residues MQELIMIFTNSLKDISIWSIIDILIVAFIFYRGYILIKETRAEQLLKGVILLLILIPISYVLRLQMLNFILTKTLTIGVL SIIIIFQPEIRRALEHIGSTAFDDFHVIQDDQKLEEVIDQLIVAVEDMAETKTGALIAIEQGTGLAEIISTGTQLDAVIT SALIENIFFKNTPLHDGATIIRNDRIVSAGCVLPLTNNNTINKKLGTRHRAAIGLSEISDALVIVVSEETGAISLAVKGR LTRNYDGKKLKNILLKVMRNRRDKRGKTYGEKVKICLKKLKERIS >Mature_285_residues MQELIMIFTNSLKDISIWSIIDILIVAFIFYRGYILIKETRAEQLLKGVILLLILIPISYVLRLQMLNFILTKTLTIGVL SIIIIFQPEIRRALEHIGSTAFDDFHVIQDDQKLEEVIDQLIVAVEDMAETKTGALIAIEQGTGLAEIISTGTQLDAVIT SALIENIFFKNTPLHDGATIIRNDRIVSAGCVLPLTNNNTINKKLGTRHRAAIGLSEISDALVIVVSEETGAISLAVKGR LTRNYDGKKLKNILLKVMRNRRDKRGKTYGEKVKICLKKLKERIS
Specific function: Unknown
COG id: COG1624
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014046 - InterPro: IPR003390 [H]
Pfam domain/function: PF02457 DisA_N [H]
EC number: NA
Molecular weight: Translated: 31892; Mature: 31892
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQELIMIFTNSLKDISIWSIIDILIVAFIFYRGYILIKETRAEQLLKGVILLLILIPISY CCHHEEEHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHH VLRLQMLNFILTKTLTIGVLSIIIIFQPEIRRALEHIGSTAFDDFHVIQDDQKLEEVIDQ HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHH LIVAVEDMAETKTGALIAIEQGTGLAEIISTGTQLDAVITSALIENIFFKNTPLHDGATI HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE IRNDRIVSAGCVLPLTNNNTINKKLGTRHRAAIGLSEISDALVIVVSEETGAISLAVKGR EECCEEEECCEEEEECCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC LTRNYDGKKLKNILLKVMRNRRDKRGKTYGEKVKICLKKLKERIS CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQELIMIFTNSLKDISIWSIIDILIVAFIFYRGYILIKETRAEQLLKGVILLLILIPISY CCHHEEEHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHH VLRLQMLNFILTKTLTIGVLSIIIIFQPEIRRALEHIGSTAFDDFHVIQDDQKLEEVIDQ HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHH LIVAVEDMAETKTGALIAIEQGTGLAEIISTGTQLDAVITSALIENIFFKNTPLHDGATI HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE IRNDRIVSAGCVLPLTNNNTINKKLGTRHRAAIGLSEISDALVIVVSEETGAISLAVKGR EECCEEEECCEEEEECCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC LTRNYDGKKLKNILLKVMRNRRDKRGKTYGEKVKICLKKLKERIS CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274029; 9384377 [H]