| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is trxR [H]
Identifier: 18311336
GI number: 18311336
Start: 2713169
End: 2714029
Strand: Reverse
Name: trxR [H]
Synonym: CPE2354
Alternate gene names: 18311336
Gene position: 2714029-2713169 (Counterclockwise)
Preceding gene: 18311337
Following gene: 18311333
Centisome position: 89.53
GC content: 32.17
Gene sequence:
>861_bases TTGAGCGAAAGATATGATATAGCTATAATAGGAAGCGGACCAGCTGGCCTTTCAGCTGCATTAAATGCAAAAATTAGAAA TAAAAAATTTATTCTTTTTGGTAATAATGATTTAAGTACAAAGCTTGTTAAAGCTCCAAAGGTAAATAACTATCTTGGAT TCGTTGGAAAAGATGGTATGGATCTTAAGAATCAATTTATGGGTCATCTAAAAGAGATGGATATAGAGATAACAGAGGAA AGAATAAATAGTATTTATGCTATGGGAGAATATTTCGCTCTTATGGTAAATGAAAAGATGTATGAAGCCACTTCAATAAT CATAGCAACAGGTATTGAATACACAAAACCTATGAAGGGTGAAGAAGAATTCTTAGGTAAAGGTGTAGGATACTGTGCTA CTTGTGATGCCCCTTTATATAAAGAAAAAACTGTAACTATAATTGGCTATAATAAAGAAGCTGAAGAGGAAGCTAATTTT GTAAGTGAATTAGCAGCTAAGGTTTACTATATTCCTAGATATAAGGGAGAATTTGATTTAAATTCAGAAATTGAAGTTAT TAATGATATTCCTGTAGAAATACAAGGGGATAGTAAGGTTACTAAATTAGTAACTAAAAATGGTGAAATAGAGACTGATG GTATATTTGTATTAAGAGATAGTATATCACCAGGACAATTAGTGCCAGGATTAAAAATAACTGATGATCACATAGAAGTT GATAGATTAATGAAGACTAATATAGAAGGATGTTTTGCTGCGGGAGATTGTACTGGTAGACCATACCAATATATGAAGGC TGCAGGTGAAGGAAATGTGGCTGCTTTAAGTGCAGTAGCATACTTAGACAGTAAGAAATAA
Upstream 100 bases:
>100_bases GAAAAGTTGTTGATACTTTAGTTGGCTTTAGACCAAAGGCTGCATTAGTTGAAGCTATCAAAAAATACGTTTAATAAGCT TCTTAAGGAGATGAATAATT
Downstream 100 bases:
>100_bases AAAAAGCTAACACATTGTGTTAGCTTTTTCTTTAGGTAACATTAAAAAATACATGTTGACCTATACTTTTTTCTCCAGTC TTTTCGACGCCTTTCATCCA
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR; General stress protein 35; GSP35 [H]
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MSERYDIAIIGSGPAGLSAALNAKIRNKKFILFGNNDLSTKLVKAPKVNNYLGFVGKDGMDLKNQFMGHLKEMDIEITEE RINSIYAMGEYFALMVNEKMYEATSIIIATGIEYTKPMKGEEEFLGKGVGYCATCDAPLYKEKTVTIIGYNKEAEEEANF VSELAAKVYYIPRYKGEFDLNSEIEVINDIPVEIQGDSKVTKLVTKNGEIETDGIFVLRDSISPGQLVPGLKITDDHIEV DRLMKTNIEGCFAAGDCTGRPYQYMKAAGEGNVAALSAVAYLDSKK
Sequences:
>Translated_286_residues MSERYDIAIIGSGPAGLSAALNAKIRNKKFILFGNNDLSTKLVKAPKVNNYLGFVGKDGMDLKNQFMGHLKEMDIEITEE RINSIYAMGEYFALMVNEKMYEATSIIIATGIEYTKPMKGEEEFLGKGVGYCATCDAPLYKEKTVTIIGYNKEAEEEANF VSELAAKVYYIPRYKGEFDLNSEIEVINDIPVEIQGDSKVTKLVTKNGEIETDGIFVLRDSISPGQLVPGLKITDDHIEV DRLMKTNIEGCFAAGDCTGRPYQYMKAAGEGNVAALSAVAYLDSKK >Mature_285_residues SERYDIAIIGSGPAGLSAALNAKIRNKKFILFGNNDLSTKLVKAPKVNNYLGFVGKDGMDLKNQFMGHLKEMDIEITEER INSIYAMGEYFALMVNEKMYEATSIIIATGIEYTKPMKGEEEFLGKGVGYCATCDAPLYKEKTVTIIGYNKEAEEEANFV SELAAKVYYIPRYKGEFDLNSEIEVINDIPVEIQGDSKVTKLVTKNGEIETDGIFVLRDSISPGQLVPGLKITDDHIEVD RLMKTNIEGCFAAGDCTGRPYQYMKAAGEGNVAALSAVAYLDSKK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=315, Percent_Identity=29.8412698412698, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081763, Length=267, Percent_Identity=29.5880149812734, Blast_Score=93, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6320560, Length=313, Percent_Identity=30.3514376996805, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321898, Length=318, Percent_Identity=26.1006289308176, Blast_Score=87, Evalue=3e-18,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 31529; Mature: 31398
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERYDIAIIGSGPAGLSAALNAKIRNKKFILFGNNDLSTKLVKAPKVNNYLGFVGKDGM CCCCEEEEEEECCCCCCHHHEEEEECCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCC DLKNQFMGHLKEMDIEITEERINSIYAMGEYFALMVNEKMYEATSIIIATGIEYTKPMKG CHHHHHHHHHHHCCEEEEHHHHHHHHHHHHEEEEEECCHHHHHEEEEEEECCCCCCCCCC EEEFLGKGVGYCATCDAPLYKEKTVTIIGYNKEAEEEANFVSELAAKVYYIPRYKGEFDL CHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEECCCCCCCCC NSEIEVINDIPVEIQGDSKVTKLVTKNGEIETDGIFVLRDSISPGQLVPGLKITDDHIEV CCCEEEEECCCEEEECCCCEEEEEECCCCEECCCEEEEECCCCCCCCCCCCEEECCHHHH DRLMKTNIEGCFAAGDCTGRPYQYMKAAGEGNVAALSAVAYLDSKK HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCHHHHEEEEECCCCC >Mature Secondary Structure SERYDIAIIGSGPAGLSAALNAKIRNKKFILFGNNDLSTKLVKAPKVNNYLGFVGKDGM CCCEEEEEEECCCCCCHHHEEEEECCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCC DLKNQFMGHLKEMDIEITEERINSIYAMGEYFALMVNEKMYEATSIIIATGIEYTKPMKG CHHHHHHHHHHHCCEEEEHHHHHHHHHHHHEEEEEECCHHHHHEEEEEEECCCCCCCCCC EEEFLGKGVGYCATCDAPLYKEKTVTIIGYNKEAEEEANFVSELAAKVYYIPRYKGEFDL CHHHHCCCCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEECCCCCCCCC NSEIEVINDIPVEIQGDSKVTKLVTKNGEIETDGIFVLRDSISPGQLVPGLKITDDHIEV CCCEEEEECCCEEEECCCCEEEEEECCCCEECCCEEEEECCCCCCCCCCCCEEECCHHHH DRLMKTNIEGCFAAGDCTGRPYQYMKAAGEGNVAALSAVAYLDSKK HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCHHHHEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]