| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is glgP [H]
Identifier: 18311319
GI number: 18311319
Start: 2690107
End: 2692470
Strand: Reverse
Name: glgP [H]
Synonym: CPE2337
Alternate gene names: 18311319
Gene position: 2692470-2690107 (Counterclockwise)
Preceding gene: 18311320
Following gene: 18311318
Centisome position: 88.82
GC content: 29.57
Gene sequence:
>2364_bases ATGAATAAAGAACAAATAAAGAGAGGAATCGAGAGATATCTAAAAGTAAAGTATGGTAAAAGTTCAATTAAAGATGCTAA AGATTTTGAAATTTTCAATGCATTATCACTAACTCTTTTAGAGGGAATTGTTGACGATTGGAATCATACAGAAGAACTTT ATGAGAAAGAAAAGAATGCATATTATTTTTCAGCTGAATATTTAATGGGTAGAGCTTTAGGAAATAACTTAATAAGTTTA GGACTTTATAATGAAGTAAAAGAAGTTTTAGATGAACTTGGCTTTGATTTAAATAGAATTGAGGAAATAGAAGAGGATGC TGGTTTAGGAAATGGTGGATTAGGTAGATTAGCAGCTTGTTTTATGGATTCAGGAGCTTCATTAGAAGTACCTTTAAAAG GTTATGGAATTAGATATAATAATGGTTTATTCTCTCAATATTTTGAAGATGGATTCCAAAAAGAAGATGTGGATAGTTGG CTAAAATATGGAGAACCTTGGAGCATAAGAAAAGAGGATGAATTTGTAACTGTTGATTTTGAAGATATGACAGTTAAGGC AATTCCATATGATACTCCAATTATAGGATATGCTAGTAAAAATATAAATACTTTAAGACTATGGAAGTGTGAGCCTGTAA AAGAATTTGATTTTAAATTATTCAATGAACAAAAATATGATGAGGCATTAGAGCTTAAAAATAGAGCAGAAGATATATCA AGAGTTTTATATCCAAATGACTCAAATAGAGAAGGTAAATTATTAAGGTTAAGACAGCAATATTTCTTAGTAAGTGCTTC ACTAAAAGATATAATAAGAAAGCATAAAGAGGTTTTTGGAAACGTTACTGAAGATTTTGCAAAGATGCATGCTGTTCAAT TAAATGATACTCATCCAGTTTTAGCAATTCCAGAGCTTATAAGACTTCTTGTAGATGAAGAAGGATTTACTTTTGAAGAA GCTTACAATATAGCTTCAAAAACTTTTGCTTATACAAATCATACTATATTAGCAGAAGCTTTAGAAAAATGGGATGTTGA CTTAATAGAGGAATTATTCCCAAGGATATTAGAAATAATTGAAAAGATAGATGCAGAGTTCATAGTTAGCCTTGAAGAAA AAGGATACTCAGAGGAAGAGATAGAAGAGTTTAGAATAGTTAACGATGGAAAAGTTAGAATGGCTAACTTAGCAATACAT GTAGGATTTGCTGTTAATGGTGTTGCTAAGTTACACACAGATATATTAAAAAATATTGAGCTTAAAAATTGGTATGAATT ATATCCAGAGAAGTTCCAAAACAAAACAAATGGAATAACTCCAAGAAGATGGTTAAGACTATGTAACCAAGAGCTATCAG CTTTAATCACTGAACTTTTAGGAAGCGAAGATTGGGTTAAAAATCTAGACTTATTAAAAGGATTAGAAAAATATAAAGAT GATGAAGAAGTCTTAAAGAGATTCATGGATATTAAGCACACTAAAAAAGAGCAATTAGCTGCATATATTAAAGAACATGA AGGTGTTCAGTTAGATCCGGATTCAATATTTGATATACAAATTAAGAGATTACATGAGTATAAGAGACAATTATTAAATA CTCTATATATCTTAGATTTATATTATAGATTAAAAGAAAATCCAGATATGGATATACCAAAGGTAACATTTATATATGGA GCAAAGGCTTTCCCAGGATATAAGAGAGCTAAATCAATAGTTAAATTAACAAATGAAGTTGCTAAACTTATAAATAATGA TGAATCTATAAAAGGAAAAATAAAGGTTGTATTTGTAGAAAACTACAGAGTTTCTTATGCAGAAAAATTATTCCCAGCGG CAGATGTATCAAAACAAATATCAACAGCTGGTAAAGAGGCATCAGGAACAGGAAACATGAAATTCATGTTAAATGGTGCA CCAACTTTCGGAACTAATGATGGAGCTAATGTAGAAATTGTTAGAGAAAGTGGAGTAGATAATAACTTTATCTTTGGATT AGAAGTGGAAGAGATAGAAGAATTAAAAGGAAAATATAATCCAGTTGATTACTATGAATCAGATGCAGATTTAAAGAGAG TTTTAGATTCATTAGTAGATGGTACTTTTGATGATGGAGGTAATGGTGACTTTGAAGATCTTTATAATTCATTATTAGAA GAAGGAGATCAATACTTCTTATTAGCAGATTTTAAAGCATTTAAAGATACTGAAGATAAGGTATTTGAAGCTTATAAAGA TAAATTAGGATGGGCTAAAAAGGCCTTTGAAAATACTTGTAATGCAGGTATGTTCTCAAGTGACAGAACAATACAAGAAT ATTGTGATGACATCTGGGGAATTAAAAAATGTACCAATAAATAA
Upstream 100 bases:
>100_bases GGTGGCAATTGGCAATGGAGAGTTAAAGATGATGCTCTAACTGATGAATTAGCAGAGAAAATATATGATATAACAAAATT ATATGGAAGGGTGAATATTA
Downstream 100 bases:
>100_bases TGGGGAAAATAACTTTATAAAAACGTAATAATAAAACTTACAAACATATTCAGAAAATTGCTAGATATTTTCTTCATATT GTTTGTAAGTTTTATGTTAT
Product: glycogen phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MNKEQIKRGIERYLKVKYGKSSIKDAKDFEIFNALSLTLLEGIVDDWNHTEELYEKEKNAYYFSAEYLMGRALGNNLISL GLYNEVKEVLDELGFDLNRIEEIEEDAGLGNGGLGRLAACFMDSGASLEVPLKGYGIRYNNGLFSQYFEDGFQKEDVDSW LKYGEPWSIRKEDEFVTVDFEDMTVKAIPYDTPIIGYASKNINTLRLWKCEPVKEFDFKLFNEQKYDEALELKNRAEDIS RVLYPNDSNREGKLLRLRQQYFLVSASLKDIIRKHKEVFGNVTEDFAKMHAVQLNDTHPVLAIPELIRLLVDEEGFTFEE AYNIASKTFAYTNHTILAEALEKWDVDLIEELFPRILEIIEKIDAEFIVSLEEKGYSEEEIEEFRIVNDGKVRMANLAIH VGFAVNGVAKLHTDILKNIELKNWYELYPEKFQNKTNGITPRRWLRLCNQELSALITELLGSEDWVKNLDLLKGLEKYKD DEEVLKRFMDIKHTKKEQLAAYIKEHEGVQLDPDSIFDIQIKRLHEYKRQLLNTLYILDLYYRLKENPDMDIPKVTFIYG AKAFPGYKRAKSIVKLTNEVAKLINNDESIKGKIKVVFVENYRVSYAEKLFPAADVSKQISTAGKEASGTGNMKFMLNGA PTFGTNDGANVEIVRESGVDNNFIFGLEVEEIEELKGKYNPVDYYESDADLKRVLDSLVDGTFDDGGNGDFEDLYNSLLE EGDQYFLLADFKAFKDTEDKVFEAYKDKLGWAKKAFENTCNAGMFSSDRTIQEYCDDIWGIKKCTNK
Sequences:
>Translated_787_residues MNKEQIKRGIERYLKVKYGKSSIKDAKDFEIFNALSLTLLEGIVDDWNHTEELYEKEKNAYYFSAEYLMGRALGNNLISL GLYNEVKEVLDELGFDLNRIEEIEEDAGLGNGGLGRLAACFMDSGASLEVPLKGYGIRYNNGLFSQYFEDGFQKEDVDSW LKYGEPWSIRKEDEFVTVDFEDMTVKAIPYDTPIIGYASKNINTLRLWKCEPVKEFDFKLFNEQKYDEALELKNRAEDIS RVLYPNDSNREGKLLRLRQQYFLVSASLKDIIRKHKEVFGNVTEDFAKMHAVQLNDTHPVLAIPELIRLLVDEEGFTFEE AYNIASKTFAYTNHTILAEALEKWDVDLIEELFPRILEIIEKIDAEFIVSLEEKGYSEEEIEEFRIVNDGKVRMANLAIH VGFAVNGVAKLHTDILKNIELKNWYELYPEKFQNKTNGITPRRWLRLCNQELSALITELLGSEDWVKNLDLLKGLEKYKD DEEVLKRFMDIKHTKKEQLAAYIKEHEGVQLDPDSIFDIQIKRLHEYKRQLLNTLYILDLYYRLKENPDMDIPKVTFIYG AKAFPGYKRAKSIVKLTNEVAKLINNDESIKGKIKVVFVENYRVSYAEKLFPAADVSKQISTAGKEASGTGNMKFMLNGA PTFGTNDGANVEIVRESGVDNNFIFGLEVEEIEELKGKYNPVDYYESDADLKRVLDSLVDGTFDDGGNGDFEDLYNSLLE EGDQYFLLADFKAFKDTEDKVFEAYKDKLGWAKKAFENTCNAGMFSSDRTIQEYCDDIWGIKKCTNK >Mature_787_residues MNKEQIKRGIERYLKVKYGKSSIKDAKDFEIFNALSLTLLEGIVDDWNHTEELYEKEKNAYYFSAEYLMGRALGNNLISL GLYNEVKEVLDELGFDLNRIEEIEEDAGLGNGGLGRLAACFMDSGASLEVPLKGYGIRYNNGLFSQYFEDGFQKEDVDSW LKYGEPWSIRKEDEFVTVDFEDMTVKAIPYDTPIIGYASKNINTLRLWKCEPVKEFDFKLFNEQKYDEALELKNRAEDIS RVLYPNDSNREGKLLRLRQQYFLVSASLKDIIRKHKEVFGNVTEDFAKMHAVQLNDTHPVLAIPELIRLLVDEEGFTFEE AYNIASKTFAYTNHTILAEALEKWDVDLIEELFPRILEIIEKIDAEFIVSLEEKGYSEEEIEEFRIVNDGKVRMANLAIH VGFAVNGVAKLHTDILKNIELKNWYELYPEKFQNKTNGITPRRWLRLCNQELSALITELLGSEDWVKNLDLLKGLEKYKD DEEVLKRFMDIKHTKKEQLAAYIKEHEGVQLDPDSIFDIQIKRLHEYKRQLLNTLYILDLYYRLKENPDMDIPKVTFIYG AKAFPGYKRAKSIVKLTNEVAKLINNDESIKGKIKVVFVENYRVSYAEKLFPAADVSKQISTAGKEASGTGNMKFMLNGA PTFGTNDGANVEIVRESGVDNNFIFGLEVEEIEELKGKYNPVDYYESDADLKRVLDSLVDGTFDDGGNGDFEDLYNSLLE EGDQYFLLADFKAFKDTEDKVFEAYKDKLGWAKKAFENTCNAGMFSSDRTIQEYCDDIWGIKKCTNK
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI5032009, Length=815, Percent_Identity=44.0490797546012, Blast_Score=643, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=811, Percent_Identity=45.0061652281134, Blast_Score=642, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=807, Percent_Identity=44.2379182156134, Blast_Score=628, Evalue=1e-180, Organism=Homo sapiens, GI255653002, Length=692, Percent_Identity=45.6647398843931, Blast_Score=602, Evalue=1e-172, Organism=Homo sapiens, GI257900462, Length=663, Percent_Identity=44.1930618401207, Blast_Score=566, Evalue=1e-161, Organism=Escherichia coli, GI48994936, Length=797, Percent_Identity=43.2873274780427, Blast_Score=644, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=803, Percent_Identity=43.3374844333748, Blast_Score=635, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=816, Percent_Identity=45.8333333333333, Blast_Score=694, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=816, Percent_Identity=45.8333333333333, Blast_Score=693, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=826, Percent_Identity=42.4939467312349, Blast_Score=568, Evalue=1e-162, Organism=Drosophila melanogaster, GI78706832, Length=817, Percent_Identity=46.0220318237454, Blast_Score=683, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=817, Percent_Identity=46.0220318237454, Blast_Score=683, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 90745; Mature: 90745
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKEQIKRGIERYLKVKYGKSSIKDAKDFEIFNALSLTLLEGIVDDWNHTEELYEKEKNA CCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC YYFSAEYLMGRALGNNLISLGLYNEVKEVLDELGFDLNRIEEIEEDAGLGNGGLGRLAAC EEEEHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHH FMDSGASLEVPLKGYGIRYNNGLFSQYFEDGFQKEDVDSWLKYGEPWSIRKEDEFVTVDF HHCCCCCEEEECCCCCEEECCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEE EDMTVKAIPYDTPIIGYASKNINTLRLWKCEPVKEFDFKLFNEQKYDEALELKNRAEDIS CCCEEEECCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH RVLYPNDSNREGKLLRLRQQYFLVSASLKDIIRKHKEVFGNVTEDFAKMHAVQLNDTHPV HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCCCC LAIPELIRLLVDEEGFTFEEAYNIASKTFAYTNHTILAEALEKWDVDLIEELFPRILEII HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH EKIDAEFIVSLEEKGYSEEEIEEFRIVNDGKVRMANLAIHVGFAVNGVAKLHTDILKNIE HHHCHHHEEEEHHCCCCHHHHHHHEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCC LKNWYELYPEKFQNKTNGITPRRWLRLCNQELSALITELLGSEDWVKNLDLLKGLEKYKD HHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC DEEVLKRFMDIKHTKKEQLAAYIKEHEGVQLDPDSIFDIQIKRLHEYKRQLLNTLYILDL HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH YYRLKENPDMDIPKVTFIYGAKAFPGYKRAKSIVKLTNEVAKLINNDESIKGKIKVVFVE HHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE NYRVSYAEKLFPAADVSKQISTAGKEASGTGNMKFMLNGAPTFGTNDGANVEIVRESGVD CCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC NNFIFGLEVEEIEELKGKYNPVDYYESDADLKRVLDSLVDGTFDDGGNGDFEDLYNSLLE CCEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH EGDQYFLLADFKAFKDTEDKVFEAYKDKLGWAKKAFENTCNAGMFSSDRTIQEYCDDIWG CCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH IKKCTNK HHHHCCC >Mature Secondary Structure MNKEQIKRGIERYLKVKYGKSSIKDAKDFEIFNALSLTLLEGIVDDWNHTEELYEKEKNA CCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC YYFSAEYLMGRALGNNLISLGLYNEVKEVLDELGFDLNRIEEIEEDAGLGNGGLGRLAAC EEEEHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHH FMDSGASLEVPLKGYGIRYNNGLFSQYFEDGFQKEDVDSWLKYGEPWSIRKEDEFVTVDF HHCCCCCEEEECCCCCEEECCCHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEE EDMTVKAIPYDTPIIGYASKNINTLRLWKCEPVKEFDFKLFNEQKYDEALELKNRAEDIS CCCEEEECCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH RVLYPNDSNREGKLLRLRQQYFLVSASLKDIIRKHKEVFGNVTEDFAKMHAVQLNDTHPV HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEECCCCCC LAIPELIRLLVDEEGFTFEEAYNIASKTFAYTNHTILAEALEKWDVDLIEELFPRILEII HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH EKIDAEFIVSLEEKGYSEEEIEEFRIVNDGKVRMANLAIHVGFAVNGVAKLHTDILKNIE HHHCHHHEEEEHHCCCCHHHHHHHEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCC LKNWYELYPEKFQNKTNGITPRRWLRLCNQELSALITELLGSEDWVKNLDLLKGLEKYKD HHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC DEEVLKRFMDIKHTKKEQLAAYIKEHEGVQLDPDSIFDIQIKRLHEYKRQLLNTLYILDL HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH YYRLKENPDMDIPKVTFIYGAKAFPGYKRAKSIVKLTNEVAKLINNDESIKGKIKVVFVE HHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE NYRVSYAEKLFPAADVSKQISTAGKEASGTGNMKFMLNGAPTFGTNDGANVEIVRESGVD CCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCC NNFIFGLEVEEIEELKGKYNPVDYYESDADLKRVLDSLVDGTFDDGGNGDFEDLYNSLLE CCEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH EGDQYFLLADFKAFKDTEDKVFEAYKDKLGWAKKAFENTCNAGMFSSDRTIQEYCDDIWG CCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH IKKCTNK HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]