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The map label for this gene is gde

Identifier: 18311318

GI number: 18311318

Start: 2687746

End: 2689764

Strand: Reverse

Name: gde

Synonym: CPE2336

Alternate gene names: NA

Gene position: 2689764-2687746 (Counterclockwise)

Preceding gene: 18311319

Following gene: 18311317

Centisome position: 88.73

GC content: 29.02

Gene sequence:

>2019_bases
ATGAAGTTTGGAAAAAAAGATTGGACTAGTTATGATAGAGGGATAGAAAAAGAGTGGATGCTTACTAATGGTATAAGTGG
ATTTTGTGGAGGAACTGCTATAGGAGCAAACTGTAGAAAATATCAAGGGTTATTAGTAGCATGTACTAATTCTCCAGAAG
AGAGATATATGATTCTTTCAAATTTAAATGAGGAAATAAATATTGATGGAAAGCTTCACCAGTTGAGTTCTTGTAAATAT
ACAGATAAAATAGTGGATGGCTTTAAAAATCTTCAAGGATTTTATTATGATGGACTACCTCATTTTAGATTTTTTGTAGA
TGGAGTAGTTATAAATAAAAAGATTGCTATGGAATATGGAAAGAACACTGCAGTAATAGAATATGACATATTAAATGGAA
GTAAAGAATCAAAAATAAATATTAAACCACTATTTACTTTTAGAAATCCAGGAGTGTGTAGTGAAGAAGAAAATTTGAAA
TTTTCAAAAACTGTGGATAAAAATAAAATTCAACTTACTCCACAGTTAAATAAGGACATAAATATAAGATTTTTTACCTA
TGGTGGAAAAATATTAGATAAAACTGATAAAATTGTTGATAAAATTTATTATGATGTGGATAAAAGTACAGGTGATAAGT
TTGTGGATAAATGTTACATTCCAGGAACTGTTGAAATAAATTTAAATCCTAATGAAAGAAAAAAGGTTTATTTACTTTGC
ACTATAGAAAATGAAGAGAATTTTGACTGTGAAAAAATAATAGAAAATGAAGAGAAAAGAATAAATAATCTTAAAAATAC
CTTCGCTGATTCAAGAATTTTAGCTAAATATCTTCCAATTGCAGGGGATCAATTTATAGTAAATAGAGAGTCTATAAAGG
GAAAAACAATTTTAGCTGGCTACCCTTGGTTTTTAGATTGGGGAAGAGATGCTATGATTGCTATTAATGGATTAACTTTA
TCAACTGGAAGATTAGAAGATGCTAAAGATATTATAAGAAGTTTTAGCCTTTATGAGAAAGATGGATTAATACCAAATAT
GTTCCCTGGAAAAGGACAAGAGCCACTTTATAATACAGTAGATGCTTCCTTATGGTTTATAAATGCAGTTTATAATTATT
TGCTATATGCTAATAGTTACGAAGCTTTAGAGTTTGTTGAGAAAGAAGTTTATAAAACTATAAAAAATATAATAAAGGCT
TATAAAGAAGGTACTAAGTTCTCAATAAAAATGGATGAAGAGGATTCTTTAATAAATGCTGGTTCAGGATTAGACCAAGT
AACCTGGATGGATGTTAGAGTAAATGGCATAGTGGTTACTCCAAGACATGGTAAACCAGTTGAAATAAATGCTTTATGGT
ATAATGCCTTAAAAATAGCAGCCTTATTAAAAAATAAGTTTGAAAAAGAAGAAAAGAATGAGTATGAAGAATTAGCTAAA
AAGGTTAAAGATTCATTTACTAAGACTTTTTGGAATGAGGATAGAAAGTATCTTTACGATGTTGTAAATAATCATGAGAA
GGATGATAGTTTAAGACCTAATCAGATTTGGGCAGTATCATTACCTTTTACAATGTTAGATAGAGAAAAAGAAAAGCATA
TTGTTCAAAAGGTTTTTGAAGAATTATACACTCCTTATGGATTAAGAAGTTTAAGTAGAGACAATAAGGACTATCATGGA
ATTTATATAGGAAAGCTTTTTGATAGAGATATGGCCTATCATCAAGGAACAACATGGGCATTTCCTCTTGGAGGATTTTT
CACAGCTTACTGTAAGGTAAATGATTATTCTAAAGAAGCTGTAGATTTAGTTGATTCTTTAATGAGAGATATGGAAGATC
ATATTAAAGATCAATGCTTAGGAAGTATTGCTGAAATTTTCGATGGTGATAATCCTTATAAAGCTAGAGGATGCTATGCT
CAAGCTTGGAGTGTTGGAGAAATGCTTAGAGTTTATTATGAGGATATTCTAGGAAATCAAAAAAAATTAAAAAAAGTCCA
CAAAGATATATTTATATAA

Upstream 100 bases:

>100_bases
AAGGCCTTTTCTAAATTTATATAAAGAATTAAAATTCGTGAGATTTATAGTTAAATAGTTAAAAGGGTACTTTAGATATT
GAATTAAGAGGTGTCAATTT

Downstream 100 bases:

>100_bases
ATGTTTTGCTAGAGATTAATTTAATGATCTCTAGCTTTTTTTAATTTTTGTAATTATTAAGTTTGTAATTTTAGGATATA
ATTAAAGGAAGAACTTAGCG

Product: glycogen debranching protein

Products: NA

Alternate protein names: Amylo-Alpha-16-Glucosidase; Glycogen Debranching Protein; Glycogen Debranching -Related Protein; Glycogen Debranching ; 4-Alpha-Glucanotransferase; Amylo-Alpha-1 6-Glucosidase; Glyen Debranching; Amylo-Alpha-1 6-Glucosidase Family; AmylO-Alpha-16-Glucosidase; Glycogen Debranching Family Protein; Glycogen Debranching /Alpha-Amylase; Glycogen Debranching Archaeal Type; Glycogen Debranching Isoform 1 Related Protein; Amylo-1 6-Glucosidase

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILSNLNEEINIDGKLHQLSSCKY
TDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYGKNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLK
FSKTVDKNKIQLTPQLNKDINIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLC
TIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAGYPWFLDWGRDAMIAINGLTL
STGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTVDASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKA
YKEGTKFSIKMDEEDSLINAGSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAK
KVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFEELYTPYGLRSLSRDNKDYHG
IYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEAVDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYA
QAWSVGEMLRVYYEDILGNQKKLKKVHKDIFI

Sequences:

>Translated_672_residues
MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILSNLNEEINIDGKLHQLSSCKY
TDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYGKNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLK
FSKTVDKNKIQLTPQLNKDINIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLC
TIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAGYPWFLDWGRDAMIAINGLTL
STGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTVDASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKA
YKEGTKFSIKMDEEDSLINAGSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAK
KVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFEELYTPYGLRSLSRDNKDYHG
IYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEAVDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYA
QAWSVGEMLRVYYEDILGNQKKLKKVHKDIFI
>Mature_672_residues
MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILSNLNEEINIDGKLHQLSSCKY
TDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYGKNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLK
FSKTVDKNKIQLTPQLNKDINIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLC
TIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAGYPWFLDWGRDAMIAINGLTL
STGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTVDASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKA
YKEGTKFSIKMDEEDSLINAGSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAK
KVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFEELYTPYGLRSLSRDNKDYHG
IYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEAVDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYA
QAWSVGEMLRVYYEDILGNQKKLKKVHKDIFI

Specific function: Unknown

COG id: COG3408

COG function: function code G; Glycogen debranching enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI116734860, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI116734857, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI116734851, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI116734847, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI116734853, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=2e-28,
Organism=Homo sapiens, GI116734849, Length=450, Percent_Identity=25.7777777777778, Blast_Score=125, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17535489, Length=456, Percent_Identity=25.6578947368421, Blast_Score=109, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77650; Mature: 77650

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILS
CCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCEECCCCHHHCCEEEEECCCCCHHEEEEE
NLNEEINIDGKLHQLSSCKYTDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYG
CCCCCEECCCCCHHHCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEECCEEHHCCC
KNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLKFSKTVDKNKIQLTPQLNKDI
CCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCE
NIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLC
EEEEEEECCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCEEEEEEE
TIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAG
EECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEC
YPWFLDWGRDAMIAINGLTLSTGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTV
CCEEEECCCCEEEEEECEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
DASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKAYKEGTKFSIKMDEEDSLINA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEC
GSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAK
CCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFE
HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHH
ELYTPYGLRSLSRDNKDYHGIYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEA
HHCCCCCHHHHCCCCCCCCEEEEEEHHHCHHHHHCCCEEEEECCCEEEEEEEECCCCHHH
VDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYAQAWSVGEMLRVYYEDILGNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
KKLKKVHKDIFI
HHHHHHHHHCCC
>Mature Secondary Structure
MKFGKKDWTSYDRGIEKEWMLTNGISGFCGGTAIGANCRKYQGLLVACTNSPEERYMILS
CCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCEECCCCHHHCCEEEEECCCCCHHEEEEE
NLNEEINIDGKLHQLSSCKYTDKIVDGFKNLQGFYYDGLPHFRFFVDGVVINKKIAMEYG
CCCCCEECCCCCHHHCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEECCEEHHCCC
KNTAVIEYDILNGSKESKINIKPLFTFRNPGVCSEEENLKFSKTVDKNKIQLTPQLNKDI
CCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCE
NIRFFTYGGKILDKTDKIVDKIYYDVDKSTGDKFVDKCYIPGTVEINLNPNERKKVYLLC
EEEEEEECCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCEEEEEEE
TIENEENFDCEKIIENEEKRINNLKNTFADSRILAKYLPIAGDQFIVNRESIKGKTILAG
EECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEC
YPWFLDWGRDAMIAINGLTLSTGRLEDAKDIIRSFSLYEKDGLIPNMFPGKGQEPLYNTV
CCEEEECCCCEEEEEECEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
DASLWFINAVYNYLLYANSYEALEFVEKEVYKTIKNIIKAYKEGTKFSIKMDEEDSLINA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEC
GSGLDQVTWMDVRVNGIVVTPRHGKPVEINALWYNALKIAALLKNKFEKEEKNEYEELAK
CCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVKDSFTKTFWNEDRKYLYDVVNNHEKDDSLRPNQIWAVSLPFTMLDREKEKHIVQKVFE
HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHH
ELYTPYGLRSLSRDNKDYHGIYIGKLFDRDMAYHQGTTWAFPLGGFFTAYCKVNDYSKEA
HHCCCCCHHHHCCCCCCCCEEEEEEHHHCHHHHHCCCEEEEECCCEEEEEEEECCCCHHH
VDLVDSLMRDMEDHIKDQCLGSIAEIFDGDNPYKARGCYAQAWSVGEMLRVYYEDILGNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
KKLKKVHKDIFI
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA