Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311263
Identifier: 18311263
GI number: 18311263
Start: 2625212
End: 2626429
Strand: Reverse
Name: 18311263
Synonym: CPE2281
Alternate gene names: NA
Gene position: 2626429-2625212 (Counterclockwise)
Preceding gene: 18311264
Following gene: 18311262
Centisome position: 86.64
GC content: 27.09
Gene sequence:
>1218_bases ATGAAAATTAATAAAAGAGAAAAAACTTTATTATTTGTCCTAGCTCTAGGGGTTGTTGGTTTTGGATATTATAAAGTGGT TTGGGATTATCAATATAACAAATTAAAAGATTTAAAATCAAAGGAACTAAAAGTAAAAGAAGAATATAACAATGATGTGA AAATGGTTAATTCTACAGAACCTAATAAAGAAGAAATAAATATTTTTAACTCAGAAATTCAAAACTTAACATTAGGATTT TATTCAAACATATCACAGCCCAATATAATATTAGAATTAAATAATCTTATGAATGATGCAAATGTTAAAGGAACTATGAG TTTTTCTGAAATAAAAACTATGCCAGTTATGGACAAGCAACAGGGAGATTCCTCTAGTAAAAGTGAGGATGATGAAAATC CAAATCAAATACAGGGAATAGTTAATGATTATAATAATATAATTGATAAGAAGAAAAATGAAGATAACAAAGATAAAAAG CAAGAAGAAATATATAACTTAAGCCAAATGACAGTTTCATTAAGTGTAAATGGTACTTATGATAATGTTATGAAATTTAT GAAGTCTATTGAAGAGAATCCAAAGCACATAAATATACTTAATTTTAATTTAAGTGCACAAACTGATGGAAATGTATCAG CAAATATGAATATACAACTTGTTGCAATTCCAAAGATAGATGCTTCAAAAGAAGAGTTTACAACAGCTGATGAGAAGTAT GGTAAGGAAAATCCCTTTTCAGGAGCAAGTGCAGTTGGAACAGGAACAATAGAAAATGAATTAGAAAATTCAAAGGTTAA GAATGATTTCTTAATGACTGTTAGACCTATAAATTCAGATTTACCAACAATAGTTTTAGGTAAAGCTGATGATAAGGATA AAAAAACATATTTAAATAATGATGAAAATTCAGTAAGTAATATTGAGATGTACATTTCAGGTGATAATGGAAAGTACTAT TACAAATACAAGGTTGAAGGAAGAAGTTACCCAACAAAATTTGAAGGTAATGGAGAAGAATTCAAACCAAATGGAAATGA TATAAACTTTGAAATATTCTCAGAGAAGAGAGTAAATAAAGATGATAAATCTGGAGCTAACATAAAAATTGTGAATAGTT CAGATAAAGAAGTTAATTTGATAATAAATAAGGATGACGAAAAAAGTCCAAGAGTTAATGTAACCACAGATGGCAAGGTT AAAGTGATTAAAAACTAA
Upstream 100 bases:
>100_bases GGTTTTATAGAAAATACATATATAAGTGGAATTGGAGAAAGAAATGCACAGGGAGACTATTCATTCTCCATAAATTGTAC TTTAAAGGAGGTAGGAAATA
Downstream 100 bases:
>100_bases TAGAAAAGGTGTGTGAAGCTATGGGTATCAAAAAAAGAAAAAGTAAAAAAGGGTTTACAGTAATAGAAGCTATAATTAGT TTAGTTTTGTTTACTTTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MKINKREKTLLFVLALGVVGFGYYKVVWDYQYNKLKDLKSKELKVKEEYNNDVKMVNSTEPNKEEINIFNSEIQNLTLGF YSNISQPNIILELNNLMNDANVKGTMSFSEIKTMPVMDKQQGDSSSKSEDDENPNQIQGIVNDYNNIIDKKKNEDNKDKK QEEIYNLSQMTVSLSVNGTYDNVMKFMKSIEENPKHINILNFNLSAQTDGNVSANMNIQLVAIPKIDASKEEFTTADEKY GKENPFSGASAVGTGTIENELENSKVKNDFLMTVRPINSDLPTIVLGKADDKDKKTYLNNDENSVSNIEMYISGDNGKYY YKYKVEGRSYPTKFEGNGEEFKPNGNDINFEIFSEKRVNKDDKSGANIKIVNSSDKEVNLIINKDDEKSPRVNVTTDGKV KVIKN
Sequences:
>Translated_405_residues MKINKREKTLLFVLALGVVGFGYYKVVWDYQYNKLKDLKSKELKVKEEYNNDVKMVNSTEPNKEEINIFNSEIQNLTLGF YSNISQPNIILELNNLMNDANVKGTMSFSEIKTMPVMDKQQGDSSSKSEDDENPNQIQGIVNDYNNIIDKKKNEDNKDKK QEEIYNLSQMTVSLSVNGTYDNVMKFMKSIEENPKHINILNFNLSAQTDGNVSANMNIQLVAIPKIDASKEEFTTADEKY GKENPFSGASAVGTGTIENELENSKVKNDFLMTVRPINSDLPTIVLGKADDKDKKTYLNNDENSVSNIEMYISGDNGKYY YKYKVEGRSYPTKFEGNGEEFKPNGNDINFEIFSEKRVNKDDKSGANIKIVNSSDKEVNLIINKDDEKSPRVNVTTDGKV KVIKN >Mature_405_residues MKINKREKTLLFVLALGVVGFGYYKVVWDYQYNKLKDLKSKELKVKEEYNNDVKMVNSTEPNKEEINIFNSEIQNLTLGF YSNISQPNIILELNNLMNDANVKGTMSFSEIKTMPVMDKQQGDSSSKSEDDENPNQIQGIVNDYNNIIDKKKNEDNKDKK QEEIYNLSQMTVSLSVNGTYDNVMKFMKSIEENPKHINILNFNLSAQTDGNVSANMNIQLVAIPKIDASKEEFTTADEKY GKENPFSGASAVGTGTIENELENSKVKNDFLMTVRPINSDLPTIVLGKADDKDKKTYLNNDENSVSNIEMYISGDNGKYY YKYKVEGRSYPTKFEGNGEEFKPNGNDINFEIFSEKRVNKDDKSGANIKIVNSSDKEVNLIINKDDEKSPRVNVTTDGKV KVIKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45947; Mature: 45947
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINKREKTLLFVLALGVVGFGYYKVVWDYQYNKLKDLKSKELKVKEEYNNDVKMVNSTE CCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHCCCHHCEEEHHHCCCCEEEEECCC PNKEEINIFNSEIQNLTLGFYSNISQPNIILELNNLMNDANVKGTMSFSEIKTMPVMDKQ CCHHHEEEEHHHHCEEEEEHHCCCCCCEEEEEEHHHCCCCCCEEEEEHHHHCCCCCCCCC QGDSSSKSEDDENPNQIQGIVNDYNNIIDKKKNEDNKDKKQEEIYNLSQMTVSLSVNGTY CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCEEEEEEEEEECCCH DNVMKFMKSIEENPKHINILNFNLSAQTDGNVSANMNIQLVAIPKIDASKEEFTTADEKY HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCHHHHCCCHHHC GKENPFSGASAVGTGTIENELENSKVKNDFLMTVRPINSDLPTIVLGKADDKDKKTYLNN CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHCCCC DENSVSNIEMYISGDNGKYYYKYKVEGRSYPTKFEGNGEEFKPNGNDINFEIFSEKRVNK CCCCCEEEEEEEECCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCC DDKSGANIKIVNSSDKEVNLIINKDDEKSPRVNVTTDGKVKVIKN CCCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEEEEC >Mature Secondary Structure MKINKREKTLLFVLALGVVGFGYYKVVWDYQYNKLKDLKSKELKVKEEYNNDVKMVNSTE CCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHCCCHHCEEEHHHCCCCEEEEECCC PNKEEINIFNSEIQNLTLGFYSNISQPNIILELNNLMNDANVKGTMSFSEIKTMPVMDKQ CCHHHEEEEHHHHCEEEEEHHCCCCCCEEEEEEHHHCCCCCCEEEEEHHHHCCCCCCCCC QGDSSSKSEDDENPNQIQGIVNDYNNIIDKKKNEDNKDKKQEEIYNLSQMTVSLSVNGTY CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCEEEEEEEEEECCCH DNVMKFMKSIEENPKHINILNFNLSAQTDGNVSANMNIQLVAIPKIDASKEEFTTADEKY HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCHHHHCCCHHHC GKENPFSGASAVGTGTIENELENSKVKNDFLMTVRPINSDLPTIVLGKADDKDKKTYLNN CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHCCCC DENSVSNIEMYISGDNGKYYYKYKVEGRSYPTKFEGNGEEFKPNGNDINFEIFSEKRVNK CCCCCEEEEEEEECCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCC DDKSGANIKIVNSSDKEVNLIINKDDEKSPRVNVTTDGKVKVIKN CCCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA