Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18311262
Identifier: 18311262
GI number: 18311262
Start: 2624190
End: 2625191
Strand: Reverse
Name: 18311262
Synonym: CPE2280
Alternate gene names: NA
Gene position: 2625191-2624190 (Counterclockwise)
Preceding gene: 18311263
Following gene: 18311261
Centisome position: 86.6
GC content: 24.35
Gene sequence:
>1002_bases ATGGGTATCAAAAAAAGAAAAAGTAAAAAAGGGTTTACAGTAATAGAAGCTATAATTAGTTTAGTTTTGTTTACTTTAAT AATGATACCCCTAGGTAGCTTTACTTTAGCAGCTGTTAAAACATCAGTAAAAAGTGGTGAAAAACAGCAAGCTATAGATA TTGCTCAAAGTACTGTTGAACAAATGAAAGCACTAAAAATTGATAAATTGTATAATTTATCCACATATCCTGATAAAAAT AAAATAGTATTGAATAATGGAATGATTATAACTTTAAATAAAGAAAATAATAGTCAAGATAACTTTGATTCTTATAAAGT TAATGGTATTTTTAAACCTAATAACACAAATAAGAGTTTTGAGATTGAGGGTACTATAACTCCAAATTTAAATGATTATA ATCATAATAAAGGCGAAGAAAATAAAGAGAGTGAAAAATTAGACTTTAATTATTGTGTTTATATTGGAAATACTAGTATA ACTGTTTATAAAATAGTAAATAGGGTATGGTATAGATTAAAATACAAAAGAATTAACAATGAAAATAATGATTTACTTGA ATTGAGTATAGATAAGAATATTGAAGGTGAAGTCGATATTAGATTAACACATGAAACTGATATAGATGTATCACCAAATA CTGATAATGTAAAAACTAAAAAGGATTTGAATGAATCAGATCTATTAGATAAAGATAAAGAGTCTAAAGTTAAAGTTCTT TTTTATGAAGATGAAAAAAATAAATCTATAAAGTTGAAAGCTTCTAATAGTGATATAAATGGTGATTTAAGTGTATATGC TTATAAATACAAGGGGAGTGGTGTAAGGTATTATGATAATATTGAAAATACTAATCCTCAAGGAATAGTTAAAATTTATA AGAACTATGTTGAGAAATCACCTTATGACAATAAAGTTGGTTTATATGATATAGATTTAAATGTTAATTATGGAAATCAA GAGATATATAGTATAAAGGCTACAGAATTTATAGGAGAGTGA
Upstream 100 bases:
>100_bases TGATAATAAATAAGGATGACGAAAAAAGTCCAAGAGTTAATGTAACCACAGATGGCAAGGTTAAAGTGATTAAAAACTAA TAGAAAAGGTGTGTGAAGCT
Downstream 100 bases:
>100_bases TAATATGTTATACATGAAGAAGAAAAAAGGAGCTTCTCTTGCATATGTAATAGTAGTCTTGGCAATAATTGCAACAATAG GTACAGCTATAGTTTCACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MGIKKRKSKKGFTVIEAIISLVLFTLIMIPLGSFTLAAVKTSVKSGEKQQAIDIAQSTVEQMKALKIDKLYNLSTYPDKN KIVLNNGMIITLNKENNSQDNFDSYKVNGIFKPNNTNKSFEIEGTITPNLNDYNHNKGEENKESEKLDFNYCVYIGNTSI TVYKIVNRVWYRLKYKRINNENNDLLELSIDKNIEGEVDIRLTHETDIDVSPNTDNVKTKKDLNESDLLDKDKESKVKVL FYEDEKNKSIKLKASNSDINGDLSVYAYKYKGSGVRYYDNIENTNPQGIVKIYKNYVEKSPYDNKVGLYDIDLNVNYGNQ EIYSIKATEFIGE
Sequences:
>Translated_333_residues MGIKKRKSKKGFTVIEAIISLVLFTLIMIPLGSFTLAAVKTSVKSGEKQQAIDIAQSTVEQMKALKIDKLYNLSTYPDKN KIVLNNGMIITLNKENNSQDNFDSYKVNGIFKPNNTNKSFEIEGTITPNLNDYNHNKGEENKESEKLDFNYCVYIGNTSI TVYKIVNRVWYRLKYKRINNENNDLLELSIDKNIEGEVDIRLTHETDIDVSPNTDNVKTKKDLNESDLLDKDKESKVKVL FYEDEKNKSIKLKASNSDINGDLSVYAYKYKGSGVRYYDNIENTNPQGIVKIYKNYVEKSPYDNKVGLYDIDLNVNYGNQ EIYSIKATEFIGE >Mature_332_residues GIKKRKSKKGFTVIEAIISLVLFTLIMIPLGSFTLAAVKTSVKSGEKQQAIDIAQSTVEQMKALKIDKLYNLSTYPDKNK IVLNNGMIITLNKENNSQDNFDSYKVNGIFKPNNTNKSFEIEGTITPNLNDYNHNKGEENKESEKLDFNYCVYIGNTSIT VYKIVNRVWYRLKYKRINNENNDLLELSIDKNIEGEVDIRLTHETDIDVSPNTDNVKTKKDLNESDLLDKDKESKVKVLF YEDEKNKSIKLKASNSDINGDLSVYAYKYKGSGVRYYDNIENTNPQGIVKIYKNYVEKSPYDNKVGLYDIDLNVNYGNQE IYSIKATEFIGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38129; Mature: 37998
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIKKRKSKKGFTVIEAIISLVLFTLIMIPLGSFTLAAVKTSVKSGEKQQAIDIAQSTVE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHH QMKALKIDKLYNLSTYPDKNKIVLNNGMIITLNKENNSQDNFDSYKVNGIFKPNNTNKSF HHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCEE EIEGTITPNLNDYNHNKGEENKESEKLDFNYCVYIGNTSITVYKIVNRVWYRLKYKRINN EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHEEEEEECCC ENNDLLELSIDKNIEGEVDIRLTHETDIDVSPNTDNVKTKKDLNESDLLDKDKESKVKVL CCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCEEEE FYEDEKNKSIKLKASNSDINGDLSVYAYKYKGSGVRYYDNIENTNPQGIVKIYKNYVEKS EEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHCC PYDNKVGLYDIDLNVNYGNQEIYSIKATEFIGE CCCCCCEEEEEEEEEECCCCEEEEEEHHHHCCC >Mature Secondary Structure GIKKRKSKKGFTVIEAIISLVLFTLIMIPLGSFTLAAVKTSVKSGEKQQAIDIAQSTVE CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHH QMKALKIDKLYNLSTYPDKNKIVLNNGMIITLNKENNSQDNFDSYKVNGIFKPNNTNKSF HHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCEE EIEGTITPNLNDYNHNKGEENKESEKLDFNYCVYIGNTSITVYKIVNRVWYRLKYKRINN EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHEEEEEECCC ENNDLLELSIDKNIEGEVDIRLTHETDIDVSPNTDNVKTKKDLNESDLLDKDKESKVKVL CCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCCEEEE FYEDEKNKSIKLKASNSDINGDLSVYAYKYKGSGVRYYDNIENTNPQGIVKIYKNYVEKS EEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHCC PYDNKVGLYDIDLNVNYGNQEIYSIKATEFIGE CCCCCCEEEEEEEEEECCCCEEEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA