| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311220
Identifier: 18311220
GI number: 18311220
Start: 2560233
End: 2561756
Strand: Reverse
Name: 18311220
Synonym: CPE2238
Alternate gene names: NA
Gene position: 2561756-2560233 (Counterclockwise)
Preceding gene: 18311221
Following gene: 18311218
Centisome position: 84.51
GC content: 27.49
Gene sequence:
>1524_bases ATGAAGAAAATTTTTTTAGTCTTCTTTACTATTATTAGCTTTTTTATGATGGGATGTTCTCAAAAAGAATCTTTTGATAT ATCTAAAATAACTCCACCAGAGTCAGATAATATAAAGATATTAGGGGAATGGGAAGTAGTAAGTAAGTTACATGATAGTG ATGAAAATAATTCAGGTAGCGTAAGTGGTGCTTTTCACTTAGAGAAAGATGATATTGTTAATATAAGTAAGGATGGCGTA GTTGCAAATGGAATTAGCATAGTTAATCCAAAGTTTAAGTTAAAGAGAATGGAGAGAGAGGTATTCTTTAGAGAAATAGA TAATATATCAATAAAAAATGAAATAAAGGATGCAATAAAAAGTGAATATATAGATGTGAATTCTATATATGATAGTAATA AAACATATTTAAGTATTATTTCAATTAATGATGATGAAGCGTATTTATTATTAACTGATAATCTTATTAAACTAAAAAAA GTTTCTAATGTTGTTACAAAAGAAGAGATTAGTGAATCAGAGAAATCAGATGGCGATAAGAATACTAAAAGAGAAAATAC TATAAGTCCAGAGTACTATCAAAAGGATGTAGGAATTTTACTTGGACTTAAGGAACCTGCACATATAGAAGATGACGATT TTGAGGAAGCTTCTTATAAAACTTTATGGATTTCTGTAATTAATAATGAATTACAGCCAATAATGGTTTTAGATAATTCT CTTTTATTACCAAGAATAAATGGATTCTCCAATATAAGTTTAAGTTCAACTTTAGATAATGGTAAATTTGAAAATAAACT TAAGGTTACAAGTAAAAAGAAAGATCCTAATGATAAGACTGAAATAAAGGGTGAGAAAAATACTGAAGGAATATATGAAG AAATAACCTTTGTAGGAAATGACTATATAGGATTAGAGTCTTATTCTGGAAGTGATGATTTTAGAGGTACTTTTAATGAG TATAGTATAATTCCTATTAATACTATGGATACTCATAAGAGTATGGATATAGTAAATTTATTTGGAAAAGAACAAGAGGA GAATTTTAATAAAAGTGAAAAGAATGCTATTCAAAAGTATGATATTGATGGAAGAGAGTATTATTCTAAAAATAAATACT CAAATATAACTCTTCAAAGGAAAAATGGTAATTGGCATTTAGAAGGAATATTAAACGAAAAAAGTTCAATGGATTACCCT AAAACTTTTGATATAAATATAAATCCAGTTCCTATATTAGTGAATTATGATACTTTGGCAGTTCCATGGAGTCAGGTTTT ATCTCTTGGAAGAGAGGTTAGAGATGTTGTTACAGCACCAAATGGAAAAATAGCCATAACATTAGCTAAAGATAAGTTAT CAATATATAAAGTTATTGATGGACGAATTGGAGAAAGATTAGGTGAAATAAATATAAATAACGATGAAAAGATTGTAATG GCTGAATGGGCTGTAGGAGATTATGTAAAGTATTGGGATGAGACTGTTGAAAATGTATATGGTGCTAAGAAAATAAGTGA ATAG
Upstream 100 bases:
>100_bases TATAGTGAATTAGGTAATGGAACGAAAGTGGTTATATATTTACCTAAGAAATTAATCAGGAGTGTTGAGGATGATTTAAA TTAATCAAAAGAGGTGTTTT
Downstream 100 bases:
>100_bases AATATAATAATTTATTATTAAAGTATAAATATGGGACAGTAGATAGTTTGGTGTAAAAAACAAAACTATCTACTGTTTTT TTAGTTTTAGGTCTCTAGAA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MKKIFLVFFTIISFFMMGCSQKESFDISKITPPESDNIKILGEWEVVSKLHDSDENNSGSVSGAFHLEKDDIVNISKDGV VANGISIVNPKFKLKRMEREVFFREIDNISIKNEIKDAIKSEYIDVNSIYDSNKTYLSIISINDDEAYLLLTDNLIKLKK VSNVVTKEEISESEKSDGDKNTKRENTISPEYYQKDVGILLGLKEPAHIEDDDFEEASYKTLWISVINNELQPIMVLDNS LLLPRINGFSNISLSSTLDNGKFENKLKVTSKKKDPNDKTEIKGEKNTEGIYEEITFVGNDYIGLESYSGSDDFRGTFNE YSIIPINTMDTHKSMDIVNLFGKEQEENFNKSEKNAIQKYDIDGREYYSKNKYSNITLQRKNGNWHLEGILNEKSSMDYP KTFDININPVPILVNYDTLAVPWSQVLSLGREVRDVVTAPNGKIAITLAKDKLSIYKVIDGRIGERLGEININNDEKIVM AEWAVGDYVKYWDETVENVYGAKKISE
Sequences:
>Translated_507_residues MKKIFLVFFTIISFFMMGCSQKESFDISKITPPESDNIKILGEWEVVSKLHDSDENNSGSVSGAFHLEKDDIVNISKDGV VANGISIVNPKFKLKRMEREVFFREIDNISIKNEIKDAIKSEYIDVNSIYDSNKTYLSIISINDDEAYLLLTDNLIKLKK VSNVVTKEEISESEKSDGDKNTKRENTISPEYYQKDVGILLGLKEPAHIEDDDFEEASYKTLWISVINNELQPIMVLDNS LLLPRINGFSNISLSSTLDNGKFENKLKVTSKKKDPNDKTEIKGEKNTEGIYEEITFVGNDYIGLESYSGSDDFRGTFNE YSIIPINTMDTHKSMDIVNLFGKEQEENFNKSEKNAIQKYDIDGREYYSKNKYSNITLQRKNGNWHLEGILNEKSSMDYP KTFDININPVPILVNYDTLAVPWSQVLSLGREVRDVVTAPNGKIAITLAKDKLSIYKVIDGRIGERLGEININNDEKIVM AEWAVGDYVKYWDETVENVYGAKKISE >Mature_507_residues MKKIFLVFFTIISFFMMGCSQKESFDISKITPPESDNIKILGEWEVVSKLHDSDENNSGSVSGAFHLEKDDIVNISKDGV VANGISIVNPKFKLKRMEREVFFREIDNISIKNEIKDAIKSEYIDVNSIYDSNKTYLSIISINDDEAYLLLTDNLIKLKK VSNVVTKEEISESEKSDGDKNTKRENTISPEYYQKDVGILLGLKEPAHIEDDDFEEASYKTLWISVINNELQPIMVLDNS LLLPRINGFSNISLSSTLDNGKFENKLKVTSKKKDPNDKTEIKGEKNTEGIYEEITFVGNDYIGLESYSGSDDFRGTFNE YSIIPINTMDTHKSMDIVNLFGKEQEENFNKSEKNAIQKYDIDGREYYSKNKYSNITLQRKNGNWHLEGILNEKSSMDYP KTFDININPVPILVNYDTLAVPWSQVLSLGREVRDVVTAPNGKIAITLAKDKLSIYKVIDGRIGERLGEININNDEKIVM AEWAVGDYVKYWDETVENVYGAKKISE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57780; Mature: 57780
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIFLVFFTIISFFMMGCSQKESFDISKITPPESDNIKILGEWEVVSKLHDSDENNSGS CCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCC VSGAFHLEKDDIVNISKDGVVANGISIVNPKFKLKRMEREVFFREIDNISIKNEIKDAIK EEEEEEECCCCEEEECCCCEEECCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SEYIDVNSIYDSNKTYLSIISINDDEAYLLLTDNLIKLKKVSNVVTKEEISESEKSDGDK HHCEEEEHEECCCCEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC NTKRENTISPEYYQKDVGILLGLKEPAHIEDDDFEEASYKTLWISVINNELQPIMVLDNS CCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCC LLLPRINGFSNISLSSTLDNGKFENKLKVTSKKKDPNDKTEIKGEKNTEGIYEEITFVGN EEEEECCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCHHHHHEEECC DYIGLESYSGSDDFRGTFNEYSIIPINTMDTHKSMDIVNLFGKEQEENFNKSEKNAIQKY CEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHCCCCHHHHHHHEE DIDGREYYSKNKYSNITLQRKNGNWHLEGILNEKSSMDYPKTFDININPVPILVNYDTLA CCCCHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEE VPWSQVLSLGREVRDVVTAPNGKIAITLAKDKLSIYKVIDGRIGERLGEININNDEKIVM CCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHCCEECCCCCEEEE AEWAVGDYVKYWDETVENVYGAKKISE EECCHHHHHHHHHHHHHHHHCHHHCCC >Mature Secondary Structure MKKIFLVFFTIISFFMMGCSQKESFDISKITPPESDNIKILGEWEVVSKLHDSDENNSGS CCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCC VSGAFHLEKDDIVNISKDGVVANGISIVNPKFKLKRMEREVFFREIDNISIKNEIKDAIK EEEEEEECCCCEEEECCCCEEECCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SEYIDVNSIYDSNKTYLSIISINDDEAYLLLTDNLIKLKKVSNVVTKEEISESEKSDGDK HHCEEEEHEECCCCEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC NTKRENTISPEYYQKDVGILLGLKEPAHIEDDDFEEASYKTLWISVINNELQPIMVLDNS CCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCC LLLPRINGFSNISLSSTLDNGKFENKLKVTSKKKDPNDKTEIKGEKNTEGIYEEITFVGN EEEEECCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCHHHHHEEECC DYIGLESYSGSDDFRGTFNEYSIIPINTMDTHKSMDIVNLFGKEQEENFNKSEKNAIQKY CEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHCCCCHHHHHHHEE DIDGREYYSKNKYSNITLQRKNGNWHLEGILNEKSSMDYPKTFDININPVPILVNYDTLA CCCCHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEE VPWSQVLSLGREVRDVVTAPNGKIAITLAKDKLSIYKVIDGRIGERLGEININNDEKIVM CCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCHHHHHHCCEECCCCCEEEE AEWAVGDYVKYWDETVENVYGAKKISE EECCHHHHHHHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA