| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311218
Identifier: 18311218
GI number: 18311218
Start: 2557451
End: 2558023
Strand: Reverse
Name: 18311218
Synonym: CPE2236
Alternate gene names: NA
Gene position: 2558023-2557451 (Counterclockwise)
Preceding gene: 18311220
Following gene: 18311217
Centisome position: 84.38
GC content: 28.1
Gene sequence:
>573_bases ATGAAAAAAATAGATTGTTTAGGTATGGCTTGTCCAATGCCAGTTATAAATACAAAAAAATATTTTGATTCAATAGAAGA AGGGGTTGCAGAAGTATTAGTTGATAATGAAGTAGCAAAAAATAATATCTGTAAGTATGCAGAAGGATGTGGATATAATT TTGATGCTTCAGAAAAAGAGGGAAATTATATAATTAAAATAGAAAAAAATGGTGAGAATAAAATAGAAAAGAAGGAAGAT GACTTTGTAATAGTAGTAGGTACTGATAAGTTAGGTCAAGGTAATGATGATTTAGGTACTATACTTATGAAAGGATACCT ATATACCTTATCAGAAAGTGATATCATACCTAAGGAACTTATATTCTTAAATGGTGGAGTTAAGCTTACTGTTAAAGGAT CAGAAGTTTTAGAATCATTACAAAACTTAGAAAAGCGTGGAGTTAAGATACTAAGTTGTGGAACTTGCTTAGATTTTTAT GGAATAAAAGATGATTTAGCTATAGGAGAAATAAGCAATATGTACACTATAGTTGAATCTATGAATACTTCTAATAAGGT AATAAAGTTATAA
Upstream 100 bases:
>100_bases CAAAAAAGTTTAAAAAGAACTTTTTTAGAATAACTTTGATTTTCTCAATTTACAAAAATGTGATATCTTTATAATATAGA TTATTTTAAGAGGTGAGGTC
Downstream 100 bases:
>100_bases TACTTTTGAGAGGAGAAAATATTTTTAGAGTATGGAGAATATTTTATGTGAGTATGATGTTGTAGTTGTTGGTGGCGGAA TAAGTGGAATGGCAGCAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: SirA Family Protein; Redox Protein Regulator Of Disulfide Bond Formation; SirA-Like Protein; Transcriptional Regulator; Cytoplasmic Protein; Redox Protein; Selenium Metabolism Protein Yedf; SirA-Like
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MKKIDCLGMACPMPVINTKKYFDSIEEGVAEVLVDNEVAKNNICKYAEGCGYNFDASEKEGNYIIKIEKNGENKIEKKED DFVIVVGTDKLGQGNDDLGTILMKGYLYTLSESDIIPKELIFLNGGVKLTVKGSEVLESLQNLEKRGVKILSCGTCLDFY GIKDDLAIGEISNMYTIVESMNTSNKVIKL
Sequences:
>Translated_190_residues MKKIDCLGMACPMPVINTKKYFDSIEEGVAEVLVDNEVAKNNICKYAEGCGYNFDASEKEGNYIIKIEKNGENKIEKKED DFVIVVGTDKLGQGNDDLGTILMKGYLYTLSESDIIPKELIFLNGGVKLTVKGSEVLESLQNLEKRGVKILSCGTCLDFY GIKDDLAIGEISNMYTIVESMNTSNKVIKL >Mature_190_residues MKKIDCLGMACPMPVINTKKYFDSIEEGVAEVLVDNEVAKNNICKYAEGCGYNFDASEKEGNYIIKIEKNGENKIEKKED DFVIVVGTDKLGQGNDDLGTILMKGYLYTLSESDIIPKELIFLNGGVKLTVKGSEVLESLQNLEKRGVKILSCGTCLDFY GIKDDLAIGEISNMYTIVESMNTSNKVIKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21001; Mature: 21001
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: PS01148 UPF0033
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIDCLGMACPMPVINTKKYFDSIEEGVAEVLVDNEVAKNNICKYAEGCGYNFDASEKE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCC GNYIIKIEKNGENKIEKKEDDFVIVVGTDKLGQGNDDLGTILMKGYLYTLSESDIIPKEL CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCCCCHHE IFLNGGVKLTVKGSEVLESLQNLEKRGVKILSCGTCLDFYGIKDDLAIGEISNMYTIVES EEECCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHH MNTSNKVIKL CCCCCCEEEC >Mature Secondary Structure MKKIDCLGMACPMPVINTKKYFDSIEEGVAEVLVDNEVAKNNICKYAEGCGYNFDASEKE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCCC GNYIIKIEKNGENKIEKKEDDFVIVVGTDKLGQGNDDLGTILMKGYLYTLSESDIIPKEL CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCEEEEECCCCCCCHHE IFLNGGVKLTVKGSEVLESLQNLEKRGVKILSCGTCLDFYGIKDDLAIGEISNMYTIVES EEECCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHH MNTSNKVIKL CCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA