| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is spoIIR [H]
Identifier: 18311193
GI number: 18311193
Start: 2531379
End: 2532008
Strand: Reverse
Name: spoIIR [H]
Synonym: CPE2211
Alternate gene names: 18311193
Gene position: 2532008-2531379 (Counterclockwise)
Preceding gene: 18311194
Following gene: 18311192
Centisome position: 83.53
GC content: 26.51
Gene sequence:
>630_bases ATGAAAAAAATATTATCAGTTTTATTTTTAGGAGTTATATGTTTATTTATAGTAGGAAGTTCTTTAAATACTAGACAAGC TTTAGGTGTTACAGAGGAAAATGTTGTTGAGGATATAAGTGAAAAATTAATAAGATTTCATGTTTTAGCCAATAGTGATA GTGATGTAGATCAAGACTTAAAACTTAGAGTTAAAGATGAGGTATTAAAATATATTTCACCTATATTAAATGAATCACAA AGTTTAGAGGAATCTAGAGAAATATTAAAAAGAGAAGATAAAAACATTATAAAAATAGCTGAAGATTATATTAAATCACA GGGATTTGATTATACTGTTGAAACAACATTAACAAGAGAAAATTTTCCTGTTAAAGAATATGGCAATATAGTTTTACCAC AAGGAGAATATGAGGCTTATAGAATACTAATTGGCGAAGGAAAAGGTCAAAATTGGTGGTGTGTTATGTTTCCACCTTTA TGCTTCATAGATGTTACTAAGGGACAAGTTGCCTATGATGAAACAGAGAAAAAGATGAAGGATGTATTATCAGAAGAAGA ATTTAAGAGTGTTAATAAAAAGGAAAATAACGTAAATTTTGAATTTAAGGTAATTGATTTATTTAAATAA
Upstream 100 bases:
>100_bases AACAAGAACTATAAATAGCAATAATTTATAAAAAAATATTTTTTTATTGTATATAAAAAATACTCCTTGGTAATAATCAA GGTATCAGGGGGTGTTTGTT
Downstream 100 bases:
>100_bases AAGAATTAACATATGATAATAAAGTGATTTTTAGGAGGAAAAAATATGACTAGAGCATTAGCCATGGTTTCAGGTGGATT AGATAGTATATTAGCTGCAA
Product: stage II sporulation protein R
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK
Sequences:
>Translated_209_residues MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK >Mature_209_residues MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDLKLRVKDEVLKYISPILNESQ SLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPL CFIDVTKGQVAYDETEKKMKDVLSEEEFKSVNKKENNVNFEFKVIDLFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014202 [H]
Pfam domain/function: PF09551 Spore_II_R [H]
EC number: NA
Molecular weight: Translated: 24160; Mature: 24160
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDL CHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHH KLRVKDEVLKYISPILNESQSLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRE HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC NFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPLCFIDVTKGQVAYDETEKKMK CCCHHHHCCEECCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCEEHHHHHHHHH DVLSEEEFKSVNKKENNVNFEFKVIDLFK HHHCHHHHHHHCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKKILSVLFLGVICLFIVGSSLNTRQALGVTEENVVEDISEKLIRFHVLANSDSDVDQDL CHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHH KLRVKDEVLKYISPILNESQSLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRE HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECC NFPVKEYGNIVLPQGEYEAYRILIGEGKGQNWWCVMFPPLCFIDVTKGQVAYDETEKKMK CCCHHHHCCEECCCCCCEEEEEEEECCCCCCEEEEEECCEEEEECCCCCEEHHHHHHHHH DVLSEEEFKSVNKKENNVNFEFKVIDLFK HHHCHHHHHHHCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]