Definition | Clostridium perfringens str. 13, complete genome. |
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Accession | NC_003366 |
Length | 3,031,430 |
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The map label for this gene is 18309906
Identifier: 18309906
GI number: 18309906
Start: 1123136
End: 1123966
Strand: Direct
Name: 18309906
Synonym: CPE0924
Alternate gene names: NA
Gene position: 1123136-1123966 (Clockwise)
Preceding gene: 18309905
Following gene: 18309907
Centisome position: 37.05
GC content: 26.35
Gene sequence:
>831_bases GTGAGTAAATTGAGAATAACTACATTAGTAGAAAACACAAAAATATCAGATGAATATGAAAATAAGCATGGCTTATCATT TCATATAGAAACAGAAAAACATAATATACTTTTTGATTTAGGACCCAAAAATACATTTTTGACAAATGCAAAGAAGTTAA ATATAAACTTAGAAGAAGTTGATATTGTAGTAATATCTCATGGTCATAATGATCATGGTGGTGGGTTAGAAGAATTTTTA AAAATAAATAATAAAGCTAAGGTTTATATACACAAGGATGCTTTTAATGAGTATTATAGTATGGCAGGAATTTTCAAAAA GTATATAGGATTAGATAAAGAATTAAAGGCAAATCCAAGAATAATATTGACAGAGGGAGATATGAAAATAGATGATGAGT TATATTTATTTTCAGTAGTAGAAAATAGACATAAAGTATCTAAATTTAATAAGGTCCTTTATAAAAGAGTAGATGGTATG TACTTAGAAGATGATTTTGTACATGAACAAAGTCTTATAATAACAGAAGATAATAAGAATGTACTAATGGGTGGTTGTGC TCATAATGACATAAGAAATATAATTGATAAGGCAGAGGTTATAATAGGAAAAGACTTAGACTACGTTATAAGTGGTTTCC ATATTTTTAATCCTAGCACAGGAATAAGTGAAAGTGATTTATTCATAAATACTTTAGGAGATAACTTAAATAAAAGAAAT ACTAAGTTTTATACTTGTCACTGCACAGGAATGAGAGCATTTAAAATGCTAGAGGAAAAGTTACAAGATAAAATAGAATA TATTTCTACTGGACAAGTTTTAAATATATAA
Upstream 100 bases:
>100_bases TTTCTAAGAATATAAGCTTATTACCATTATAATGTTTTTAATATTTTTATAGTTTATTTTAGTTGTTTTTAGTATAAAGG CAGTTTGAGATACAAGAGGA
Downstream 100 bases:
>100_bases AATACAAGGGATTGTATCAAAATAACTTATAAATTTTAATATAAGTATTTGATATAATCCCTTGTCTATTTATTGTATAA ATTTTCTTATCATGGTACAA
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFL KINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGM YLEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI
Sequences:
>Translated_276_residues MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFL KINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGM YLEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI >Mature_275_residues SKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEVDIVVISHGHNDHGGGLEEFLK INNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPRIILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMY LEDDFVHEQSLIITEDNKNVLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRNT KFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI
Specific function: Catalyzes the condensation of 6-hydroxymethyl-7,8- dihydropterin pyrophosphate (DHPP) with 4-(beta-D-ribofuranosyl)- aminobenzene-5'-phosphate (beta-RFA-P) to form 7,8-dihydropterin- 6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate, a precursor
COG id: COG1237
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 31727; Mature: 31596
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEV CCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEEEHEE DIVVISHGHNDHGGGLEEFLKINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPR EEEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCE IILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMYLEDDFVHEQSLIITEDNKN EEEEECCCEECCCEEEEEEHHCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCE VLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN EEEECCCHHHHHHHHHHHHEEECCCHHHHEECEEEECCCCCCCCCCEEEEECCCCCCCCC TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECC >Mature Secondary Structure SKLRITTLVENTKISDEYENKHGLSFHIETEKHNILFDLGPKNTFLTNAKKLNINLEEV CCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEECCEEEEEEEHEE DIVVISHGHNDHGGGLEEFLKINNKAKVYIHKDAFNEYYSMAGIFKKYIGLDKELKANPR EEEEEECCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCE IILTEGDMKIDDELYLFSVVENRHKVSKFNKVLYKRVDGMYLEDDFVHEQSLIITEDNKN EEEEECCCEECCCEEEEEEHHCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCE VLMGGCAHNDIRNIIDKAEVIIGKDLDYVISGFHIFNPSTGISESDLFINTLGDNLNKRN EEEECCCHHHHHHHHHHHHEEECCCHHHHEECEEEECCCCCCCCCCEEEEECCCCCCCCC TKFYTCHCTGMRAFKMLEEKLQDKIEYISTGQVLNI CEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]