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The map label for this gene is secD [H]

Identifier: 17547434

GI number: 17547434

Start: 2920598

End: 2922478

Strand: Direct

Name: secD [H]

Synonym: RSc2715

Alternate gene names: 17547434

Gene position: 2920598-2922478 (Clockwise)

Preceding gene: 17547433

Following gene: 17547435

Centisome position: 78.59

GC content: 67.46

Gene sequence:

>1881_bases
ATGAACCGCTATCCGCTCTGGAAATACCTTGTGATCCTGGTGGCGCTCGCCATCGGGTTCCTCTATACGCTGCCGAACTT
CTTCGGTGAAGCGCCCGCCGTCCAGGTGTCGTCGGGCAAGGCCACCGTCAGGGTCGACCTGGCGACGCAAAAGCAGGTCG
AAGACCTCCTCGCCGCCGCCAACCTGAAGCCGAACGGCGTGTTCTTCGACATGAACGGCACCTCGGGCAGCGTGCGCGTG
CGCTTTGCCGACACCGACACGCAGCTCAAGGCCAAGGATGCGCTGGCGCGCGGCCTGAACAGCGACCCGAACGACCCGAC
CTACATCGTCGCGCTGAACCTGCTGTCGGGTTCGCCGCGCTGGCTGACCGCCATCCATGCCCTGCCGATGTTCCTGGGCC
TGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGAACGGCGCGCTGACCAAGAAGCTCGACTCGCTGGCC
GGCGATATCCGTACCCAGCTGCGCGACAAGGGCGTGCGCCACAGCGGCATCGAGCGCAGCGGCACGACCATCAGCATCAA
GTTCACCAACCCCGACGAAGCCGACCGCGCCCGCGGCCTGCTGGCCGACAGCGCCCGCGAGCTGGCCTTCACGGTCGACA
AGACCGCCGACGGCGCCACGCTCACCGGTACCTTCACCGCCGCGGCAATGAAGGAAGTCCAGGACAACGCCGTCAAGCAG
AACGTCGTCACGCTGCACAACCGCGTCAACGAGCTCGGCGTGTCCGAGCCGGTGATCCAGCAGCAGGGCCCGGACCGCAT
CGTGGTGCAGTTGCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGCCCGCC
TGGCCGACCCGAACGCCACCGGCATTCCGCGTGCGACCGATCCGGTGCCGCTGGGTGACGAGCTGTTCACGCAAGGCCGC
GGCGCGCCGGTGCTGCTGCAGAAGCAGGTGATCTTCACCGGCGACCGCATCAACAGCGCCTCGGCCGGCTTCGACCAGAA
CCACAACCCCTCGGTCGACATCACGCTCGACGGCCAGGGCGGCCGCATGCTGCGCGACGTCTCGCGCGACAACATCGGCA
AGCGCATGGGCATCGTGCTGTTCGAGAAGGGCAAGGGCGAGGTGCTGACCGTCGCCACCATCCAGTCCGAACTGGGCTCG
CGCTTCCAGATCACCGGCATCGGCTCGGTGGAATCGGCCTCCGACCTGGCGCTGCTGCTGCGCGCGGGCTCCCTGGCCGC
GCCGATGGAGATCATCGAAGAGCGCACCATCGGCCCGTCGCTGGGCGCCGACAACATCAAGAAGGGCTTCAATTCGGCCG
CGTACGGCTTCGCCGCCATCTCGGTGTTCATGGTGCTGTACTACATGCTGTTCGGCGCGTTCTCGGTGGTGGCGCTGGGC
GTGAACGTGTTCCTGCTGATCGCCATCCTGTCGATGCTGCAGGCCACCCTCACCCTGCCCGGCATCGCGGCCATCGCGCT
GGCGCTGGGCATGGCGATCGACGCCAACGTGCTGATCAACGAGCGCGTCCGCGAAGAGCTGCGCAACGGCGCGTCGCCGC
AGATGGCGATCGCCGCCGGCTTCGAGCGCGCCTGGGCGACCATCCTGGACTCGAACGTGACCACGCTGATCGCCGGCCTG
GCGCTGCTGGCCTTCGGCTCGGGCCCGGTGCGCGGCTTCGCCGTGGTGCACTGCCTGGGCATCCTGACGTCGATGTTCTC
GGCGGTGTTCTTCAACCGCAGCCTGGTCAACCTCTGGTACGGCCGCAAGAAGAAGCTGCAGAGCCTCGCCATCGGCCAGG
TGTGGAAACCCGCCGGCACCGAAAGTCCGGCCAAGCAGTAA

Upstream 100 bases:

>100_bases
CGCTCCGCGCGGCCGCCGGCACCCCAGGCAGCGCCTATCCTGAGATTGCCGCGCCGTCGCCTTCCCGCGCCGCCTGACCG
CTCTCCAAGCGTCCTCCAAG

Downstream 100 bases:

>100_bases
CGCTACGACGACCTCACCGCATCGCGCATAACCGGCACCGGCCCGACTGACGGGCCGCTTGCCACAAAGGGCAGAACATG
GAGTTTTTCCGCATCCGCCG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAANLKPNGVFFDMNGTSGSVRV
RFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPRWLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLA
GDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ
NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGR
GAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGS
RFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG
VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKKLQSLAIGQVWKPAGTESPAKQ

Sequences:

>Translated_626_residues
MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAANLKPNGVFFDMNGTSGSVRV
RFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPRWLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLA
GDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ
NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGR
GAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGS
RFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG
VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKKLQSLAIGQVWKPAGTESPAKQ
>Mature_626_residues
MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAANLKPNGVFFDMNGTSGSVRV
RFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPRWLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLA
GDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ
NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGR
GAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGS
RFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG
VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGL
ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKKLQSLAIGQVWKPAGTESPAKQ

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=626, Percent_Identity=44.408945686901, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66811; Mature: 66811

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHHHHC
NLKPNGVFFDMNGTSGSVRVRFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPR
CCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCH
WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHSGIERS
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ
CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCC
GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQG
CCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
GRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGSRFQITGIGSVESASDLALLL
CHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHHCCEEEEEECCCCCCHHHHHHHH
RAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG
HCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHHHH
FERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWY
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GRKKKLQSLAIGQVWKPAGTESPAKQ
CHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHHHHC
NLKPNGVFFDMNGTSGSVRVRFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPR
CCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCH
WLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLAGDIRTQLRDKGVRHSGIERS
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ
CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAT
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCC
GIPRATDPVPLGDELFTQGRGAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQG
CCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
GRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGSRFQITGIGSVESASDLALLL
CHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHHCCEEEEEECCCCCCHHHHHHHH
RAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG
HCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEHHHH
FERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWY
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GRKKKLQSLAIGQVWKPAGTESPAKQ
CHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]