Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17547373
Identifier: 17547373
GI number: 17547373
Start: 2856974
End: 2859013
Strand: Direct
Name: 17547373
Synonym: RSc2654
Alternate gene names: NA
Gene position: 2856974-2859013 (Clockwise)
Preceding gene: 17547372
Following gene: 17547376
Centisome position: 76.87
GC content: 70.25
Gene sequence:
>2040_bases ATGAAGACGTTGGTTCCCGGGGGTATCGTCCGAGCGCTGGTTGCGCTCGGGCTGGTGTCGTATCAGGCCGTACCGGCTCT GGCGACGGGCAAGACAGGCATGACGGATACACGGCTGCAATGGGTGACGCAGCTGATCGTTAAGGAAAAGAGCGCAACGG GCAGTACGGCCAGGACGCAGTCGGTTGCCGCGGATGTGGCGACGGTGCAACGCTGGTCGGTCGCCGCCCAACTGCCCGTG ACGTACAAGCGCGCCATGTCGGGCGGCGCGCATGTGGTGACGCTGTCGAAGGGGATGTCGGCGGCCGACGCGCAAACGAT CGCGGCCCGCATGGAATCCAGCGGCCAGTTCGAGTACGTGTCGCCGGACACCATTCTGCGGCCCGCTGCCACGCCCACCG ACCCCTGGTTCGCCAACCAGTGGAACCTGCTGCCCGCCACCGGTACGGTGAGCACCGTCACCACCCGCAGCGGCGCCACC GCGGCCAACGGCGCCACCACCAAGGGCGGCGCCAACCTGACCACGGCGTGGGACACCACCAAGGGCTCGAACACCGTCAC GGTCACGGTCATCGATACCGGGCTCCTCGCCGGCCACGCCGATCTGTCGGGGGCCACGATCCAGCCGGGCTACGACTTCG TCAGCAGTACCGCGATGACCGGCACACCCGACCCCGTCACCAACCTGTCGATCCCCAGCGGCTTCGTGGAGAACGACGCG ACCGCCGGCCGCGACAGCGATCCGACCGACCCCGGCGACTGGATCACCACCTCGGATGCCACGAACTACCCCAGCTTCTG CGGCACCTCGGTGACGGACAGCAGTTGGCACGGCACCTTCGTCACCGGCCTGATCGCCGCCCAGCACAACGCCATCGGGG TGGCCGGCGTGGCACCCGGCGTCAGCGTGCAGATGACGCGCGCAATAGGCAAATGCGGCGGCGCCAGCTCCGACATCCTC GATGCGCTCACCTGGGCCGCTGGCGGCACCGTACCGGGCGTGACGACGAATGCAACGCCCGCCAAGGTGATCAACATGAG CCTGGGCGGCAGCACAGCGTGCACCACGGCACAGCAGAGCGCGATCACGGCGGCGCGCTCGCTCGGCGCGACCATCGTGG TGGCGACCGGCAATGAGTTCCAGAATGCGGCGATCGACGCCCCGGCGAGCTGCTCGGGCACGATCGCGGTGACGGCCCAC ACCCTCGAGGGCGACATCGCCAACTACGCCAACGTGGGAACGGGTACCACGCTGAGCGCCCCCGGCGGCGGCAACGGCTC GACCGCCACAGGCCTCGGCGCCCTGGTGCCGTCGACGTCGAATGCCGGCACCACCACCGCCAGCACCGATACGTATGTGG GCGAAGAAGGCACGTCGATGTCCACGCCGCAGGTGGCGGGCGTCGCCGCGCTGATGCTGTCCGTCAACGCCGCTCTGACG CCGGACCAGATCAAGACCATCCTGCAGACGTCGTCCCGGCCGTTCCCGCCGGACACCTTCTGCACCACGCACGCGGGCGT GTGCGGCGCCGGCATGCTCGACGCCGGCTCCGCCATCGCGCAGGCCCAGGGCGTGCCGACCGTGCATGCGTCGGTCTCTT CGAGCTCGGTCACGACCGGCACGCAGGTCACCCTGCAGGCCGTGGGCGGCGCGGGCTTCGGCAAGACGGTCGGCAGCCTG AGCTGGGCCCAGACCGCCGGCTCGGCGGTCACCCTCTCGGCCGGCAGCCTCGACTCGACCGGCAACGCTACCGCGACGTT CACGCCCACGGATGCCGGCACGTACACCTTTACCGTTACGCTGGTCTCGAGCGACGGCACCACCGTAAGCGACACCACCA GCCTGACGGTGACGGCGGCATCGACCTCGGGCGGCACCGGCGGCAGCACGGGCGGCAGCACCGGCACGCTCCCCTTCTCC GGCGGCACCAGCGGCATTGGCCCGCTGAACAACGGCGGCGGCGGCCTGCTGCCGCTGTGGCTCGGCGGCCTGCTGCTGGC GGCTGGCGCCCTCGGCTTCCAGCGCCGCAAGCGCGCTTGA
Upstream 100 bases:
>100_bases CGACACCAGGGTTTACACCTAGTCCGTATTCGAGACACCGTTTCAAACCCTCCCTGACAATGCAGTCCGGATTTTTTGAC ACAACAACAGGACTGCTCTC
Downstream 100 bases:
>100_bases GCGCAGGGCGGGCACGCCGCACACCGGCGTGCCCGCCCATCCGACCGCCTGCCGGTCAGCCGCGCGCCCGCCTCCCCTGG GCGCGCCATTCTCCCAGCAC
Product: serine protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 679; Mature: 679
Protein sequence:
>679_residues MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA
Sequences:
>Translated_679_residues MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA >Mature_679_residues MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQSVAADVATVQRWSVAAQLPV TYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYVSPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGAT AANGATTKGGANLTTAWDTTKGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPGVSVQMTRAIGKCGGASSDIL DALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQSAITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAH TLEGDIANYANVGTGTTLSAPGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTGTQVTLQAVGGAGFGKTVGSL SWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVTLVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFS GGTSGIGPLNNGGGGLLPLWLGGLLLAAGALGFQRRKRA
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320775, Length=230, Percent_Identity=33.9130434782609, Blast_Score=77, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324576, Length=234, Percent_Identity=29.4871794871795, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007280 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF04151 PPC [H]
EC number: NA
Molecular weight: Translated: 66889; Mature: 66889
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER ; PS50835 IG_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQ CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH SVAADVATVQRWSVAAQLPVTYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYV HHHHHHHHHHHHHEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE SPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGATAANGATTKGGANLTTAWDTT CCCCEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC KGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA CCCCEEEEEEEECCEEECCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPG CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCEEEEECCCC VSVQMTRAIGKCGGASSDILDALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQS CEEEHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH AITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAHTLEGDIANYANVGTGTTLSA HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCEEEC PGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTG HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCC TQVTLQAVGGAGFGKTVGSLSWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVT CEEEEEEECCCCCCHHHHCCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEE LVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFSGGTSGIGPLNNGGGGLLPLW EEECCCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHH LGGLLLAAGALGFQRRKRA HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKTLVPGGIVRALVALGLVSYQAVPALATGKTGMTDTRLQWVTQLIVKEKSATGSTARTQ CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH SVAADVATVQRWSVAAQLPVTYKRAMSGGAHVVTLSKGMSAADAQTIAARMESSGQFEYV HHHHHHHHHHHHHEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE SPDTILRPAATPTDPWFANQWNLLPATGTVSTVTTRSGATAANGATTKGGANLTTAWDTT CCCCEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC KGSNTVTVTVIDTGLLAGHADLSGATIQPGYDFVSSTAMTGTPDPVTNLSIPSGFVENDA CCCCEEEEEEEECCEEECCCCCCCCEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC TAGRDSDPTDPGDWITTSDATNYPSFCGTSVTDSSWHGTFVTGLIAAQHNAIGVAGVAPG CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCEEEEECCCC VSVQMTRAIGKCGGASSDILDALTWAAGGTVPGVTTNATPAKVINMSLGGSTACTTAQQS CEEEHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH AITAARSLGATIVVATGNEFQNAAIDAPASCSGTIAVTAHTLEGDIANYANVGTGTTLSA HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCEEEC PGGGNGSTATGLGALVPSTSNAGTTTASTDTYVGEEGTSMSTPQVAGVAALMLSVNAALT CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC PDQIKTILQTSSRPFPPDTFCTTHAGVCGAGMLDAGSAIAQAQGVPTVHASVSSSSVTTG HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCC TQVTLQAVGGAGFGKTVGSLSWAQTAGSAVTLSAGSLDSTGNATATFTPTDAGTYTFTVT CEEEEEEECCCCCCHHHHCCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEE LVSSDGTTVSDTTSLTVTAASTSGGTGGSTGGSTGTLPFSGGTSGIGPLNNGGGGLLPLW EEECCCCEEECCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHH LGGLLLAAGALGFQRRKRA HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2187155; 12024217 [H]