Definition Ralstonia solanacearum GMI1000, complete genome.
Accession NC_003295
Length 3,716,413

Click here to switch to the map view.

The map label for this gene is 17547372

Identifier: 17547372

GI number: 17547372

Start: 2855124

End: 2856755

Strand: Direct

Name: 17547372

Synonym: RSc2653

Alternate gene names: NA

Gene position: 2855124-2856755 (Clockwise)

Preceding gene: 17547371

Following gene: 17547373

Centisome position: 76.82

GC content: 71.38

Gene sequence:

>1632_bases
ATGACCTCCCTCTTCTCCCGATCGAAGCGCGGCCTGCGCACAGGCGCAGGGCTGCTGGGTGCGGCACTGATGCTGGCGTC
CCATGCCGTCCCGGCCGCCGGGACCGCCCAGCCGCAGTACACCGGTGACCTGATCATCAAGTGGCGCGACGACACCAGCG
GCACGCGCAAGCCGCTGTCCGCCACGGAGGCGAGCAATCGCCTGCTGTCGGTCGCGCAGGCCGCCGGCAACACGCTGCAG
GTCAAGCGCACGCTGGCGACCGACGCCCAGCTGATGCGCACCGGGCTGTCCGACGCCGCCGGCATCGAGGCCGCCGCCGC
CAAGGTCGCCCAGGATGCACGGGTGGCCTATGCCGTGCCGGACCGCATCCTGTACCCGACCGCGACACCCAACGACCCGC
TGTTCAGCACGCAGAACAACCTGCAGAGCCCGACCGTGGTGGCCGGCGGCATCAACGTCGCGTCGGCGTGGGACATCACG
CTGGGGTCGTCCAGCCTGGTGGTGGCGGTGGTCGATACCGGCTATACCGACCACCCCGATCTGTCCGGCAAGATCCTGCC
CGGCTACAACTTCATCTCGGACCCCGCCCGTGCCGGCAACAGCACCGGCCGGGGCAGCGATGCGCACGACACGGGCGACG
GCGTGACCAGCGCCGATGTCTCCGCGATCAGCGGCTGCACGAGCAGCGACATCGGCAACAGCACCTGGCACGGCACGGAA
GTGATGAGCGTGCTGGCCGCCGGCACCAACAATGCGCTCGATATCGCCGGCGTGGGCTGGAACACCCGCATCGTGCCGGT
GCGCACGTCGGGCAAGTGCGGCGCGCTGCTGTCCGATACCGTGGACGGCATGCTGTGGGCGGGTGGGATCTCGGTGTCGG
GCGTGCCGGCCAACCCCAACCCGGCACGCGTGATCAACGTGAGCCTGGGCAGCGTCGGCAGTTGCTCGGCGGCGGAACAG
GATGCGATCAACCGGCTGGCCGCGCTTGGCACCGTGGTGGTGGCCGCGGCGGGCAACGAGGGCAGCGCGGTCGACGCCCC
CGCGAATTGCAGCGGCGCGATTGCCGTCACCGCGCACGTCGACAGCGGCGAAAACGCGAGCTACGCCAACGTCGGCTCCC
AGGTGGCGCTCAGCGCGCCGGGCGGCGGTTGCGCCAACTCGCAGGCGACGAGCAGCGGCTGCACCGGCCCCGTGTCCGTG
ATCCAGGCCGACTCGAATGACGGGCAGTACAGCCTGGGCAATTCTGTGGTCAAGTCCGTGGCCGGCACCAGCTTCTCCAC
GCCCGAGGTCGCCGGCACGATCGCGCTGATGCTGAGCGTGCAGTCGCAACTGTCGAACGCGCAGATCCTGGCGGGGCTGC
AGCAGACCGCGCGCGCGCATCCGAGCGGCACCTTTTGCGCGACCCGGGGAGGCTGCGGCGCGGGCCTGCTCGATACGGCG
GGAGCGGTGCGGTACGCGCAGACGACAACGCCGGCCGGGATCGGCAGCGGCTCGTCGAGCTCCAGCAGCTCCGGCAGTTC
CAGTTCCAGCAGCGGCGGCGGCGGTGGCGGCGGCGCCATCGAAATGGCCGGCGCGGCATTGCTGCTGGCAGCCGGCCTGG
CGTGCCGCCGCCGGCGCACGACCGCCCGCTGA

Upstream 100 bases:

>100_bases
CCGCGAAACATACGTTTGCGTGCTACGTTTTCCAATGCCACCTCGCGTGGGTCGATGGATCACCTGTAGCATGGCAAGCG
TCACGATGGAGCCTCCACGC

Downstream 100 bases:

>100_bases
GGCGGCCTTTCCTTCCCTGGCATGCCTCGCACGCGCTGTGCGGGGCATCATCATCTTCCGTGCGCTTCCGGCCGCCATCG
CCACGGTGGCGGCTGGCGAT

Product: extracellular protease signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 542

Protein sequence:

>543_residues
MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQ
VKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDIT
LGSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE
VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQ
DAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSV
IQADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA
GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR

Sequences:

>Translated_543_residues
MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQ
VKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDIT
LGSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE
VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQ
DAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSV
IQADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA
GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR
>Mature_542_residues
TSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQV
KRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITL
GSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTEV
MSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQD
AINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVI
QADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTAG
AVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR

Specific function: Unknown

COG id: COG1404

COG function: function code O; Subtilisin-like serine proteases

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S8 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007280
- InterPro:   IPR000209
- InterPro:   IPR022398
- InterPro:   IPR015500 [H]

Pfam domain/function: PF00082 Peptidase_S8; PF04151 PPC [H]

EC number: NA

Molecular weight: Translated: 53485; Mature: 53353

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00138 SUBTILASE_SER ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLS
CCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
ATEASNRLLSVAQAAGNTLQVKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVP
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCEEEEECC
DRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITLGSSSLVVAVVDTGYTDHPD
CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCC
LSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE
CCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH
VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPN
HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCCEEEECCEEECCCCCCCC
PARVINVSLGSVGSCSAAEQDAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHV
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
DSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVIQADSNDGQYSLGNSVVKSV
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH
AGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHC
GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRT
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
TAR
CCC
>Mature Secondary Structure 
TSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLS
CCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
ATEASNRLLSVAQAAGNTLQVKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVP
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCEEEEECC
DRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITLGSSSLVVAVVDTGYTDHPD
CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCC
LSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE
CCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH
VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPN
HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCCEEEECCEEECCCCCCCC
PARVINVSLGSVGSCSAAEQDAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHV
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
DSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVIQADSNDGQYSLGNSVVKSV
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH
AGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHC
GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRT
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
TAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187155; 12024217 [H]