Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17547372
Identifier: 17547372
GI number: 17547372
Start: 2855124
End: 2856755
Strand: Direct
Name: 17547372
Synonym: RSc2653
Alternate gene names: NA
Gene position: 2855124-2856755 (Clockwise)
Preceding gene: 17547371
Following gene: 17547373
Centisome position: 76.82
GC content: 71.38
Gene sequence:
>1632_bases ATGACCTCCCTCTTCTCCCGATCGAAGCGCGGCCTGCGCACAGGCGCAGGGCTGCTGGGTGCGGCACTGATGCTGGCGTC CCATGCCGTCCCGGCCGCCGGGACCGCCCAGCCGCAGTACACCGGTGACCTGATCATCAAGTGGCGCGACGACACCAGCG GCACGCGCAAGCCGCTGTCCGCCACGGAGGCGAGCAATCGCCTGCTGTCGGTCGCGCAGGCCGCCGGCAACACGCTGCAG GTCAAGCGCACGCTGGCGACCGACGCCCAGCTGATGCGCACCGGGCTGTCCGACGCCGCCGGCATCGAGGCCGCCGCCGC CAAGGTCGCCCAGGATGCACGGGTGGCCTATGCCGTGCCGGACCGCATCCTGTACCCGACCGCGACACCCAACGACCCGC TGTTCAGCACGCAGAACAACCTGCAGAGCCCGACCGTGGTGGCCGGCGGCATCAACGTCGCGTCGGCGTGGGACATCACG CTGGGGTCGTCCAGCCTGGTGGTGGCGGTGGTCGATACCGGCTATACCGACCACCCCGATCTGTCCGGCAAGATCCTGCC CGGCTACAACTTCATCTCGGACCCCGCCCGTGCCGGCAACAGCACCGGCCGGGGCAGCGATGCGCACGACACGGGCGACG GCGTGACCAGCGCCGATGTCTCCGCGATCAGCGGCTGCACGAGCAGCGACATCGGCAACAGCACCTGGCACGGCACGGAA GTGATGAGCGTGCTGGCCGCCGGCACCAACAATGCGCTCGATATCGCCGGCGTGGGCTGGAACACCCGCATCGTGCCGGT GCGCACGTCGGGCAAGTGCGGCGCGCTGCTGTCCGATACCGTGGACGGCATGCTGTGGGCGGGTGGGATCTCGGTGTCGG GCGTGCCGGCCAACCCCAACCCGGCACGCGTGATCAACGTGAGCCTGGGCAGCGTCGGCAGTTGCTCGGCGGCGGAACAG GATGCGATCAACCGGCTGGCCGCGCTTGGCACCGTGGTGGTGGCCGCGGCGGGCAACGAGGGCAGCGCGGTCGACGCCCC CGCGAATTGCAGCGGCGCGATTGCCGTCACCGCGCACGTCGACAGCGGCGAAAACGCGAGCTACGCCAACGTCGGCTCCC AGGTGGCGCTCAGCGCGCCGGGCGGCGGTTGCGCCAACTCGCAGGCGACGAGCAGCGGCTGCACCGGCCCCGTGTCCGTG ATCCAGGCCGACTCGAATGACGGGCAGTACAGCCTGGGCAATTCTGTGGTCAAGTCCGTGGCCGGCACCAGCTTCTCCAC GCCCGAGGTCGCCGGCACGATCGCGCTGATGCTGAGCGTGCAGTCGCAACTGTCGAACGCGCAGATCCTGGCGGGGCTGC AGCAGACCGCGCGCGCGCATCCGAGCGGCACCTTTTGCGCGACCCGGGGAGGCTGCGGCGCGGGCCTGCTCGATACGGCG GGAGCGGTGCGGTACGCGCAGACGACAACGCCGGCCGGGATCGGCAGCGGCTCGTCGAGCTCCAGCAGCTCCGGCAGTTC CAGTTCCAGCAGCGGCGGCGGCGGTGGCGGCGGCGCCATCGAAATGGCCGGCGCGGCATTGCTGCTGGCAGCCGGCCTGG CGTGCCGCCGCCGGCGCACGACCGCCCGCTGA
Upstream 100 bases:
>100_bases CCGCGAAACATACGTTTGCGTGCTACGTTTTCCAATGCCACCTCGCGTGGGTCGATGGATCACCTGTAGCATGGCAAGCG TCACGATGGAGCCTCCACGC
Downstream 100 bases:
>100_bases GGCGGCCTTTCCTTCCCTGGCATGCCTCGCACGCGCTGTGCGGGGCATCATCATCTTCCGTGCGCTTCCGGCCGCCATCG CCACGGTGGCGGCTGGCGAT
Product: extracellular protease signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 543; Mature: 542
Protein sequence:
>543_residues MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQ VKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDIT LGSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQ DAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSV IQADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR
Sequences:
>Translated_543_residues MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQ VKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDIT LGSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQ DAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSV IQADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR >Mature_542_residues TSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLSATEASNRLLSVAQAAGNTLQV KRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVPDRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITL GSSSLVVAVVDTGYTDHPDLSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTEV MSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPNPARVINVSLGSVGSCSAAEQD AINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHVDSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVI QADSNDGQYSLGNSVVKSVAGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTAG AVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRTTAR
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007280 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF04151 PPC [H]
EC number: NA
Molecular weight: Translated: 53485; Mature: 53353
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: PS00138 SUBTILASE_SER ; PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLS CCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC ATEASNRLLSVAQAAGNTLQVKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVP HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCEEEEECC DRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITLGSSSLVVAVVDTGYTDHPD CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCC LSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE CCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPN HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCCEEEECCEEECCCCCCCC PARVINVSLGSVGSCSAAEQDAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHV CCEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEE DSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVIQADSNDGQYSLGNSVVKSV CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH AGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHC GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRT CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC TAR CCC >Mature Secondary Structure TSLFSRSKRGLRTGAGLLGAALMLASHAVPAAGTAQPQYTGDLIIKWRDDTSGTRKPLS CCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC ATEASNRLLSVAQAAGNTLQVKRTLATDAQLMRTGLSDAAGIEAAAAKVAQDARVAYAVP HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCEEEEECC DRILYPTATPNDPLFSTQNNLQSPTVVAGGINVASAWDITLGSSSLVVAVVDTGYTDHPD CCEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCC LSGKILPGYNFISDPARAGNSTGRGSDAHDTGDGVTSADVSAISGCTSSDIGNSTWHGTE CCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHH VMSVLAAGTNNALDIAGVGWNTRIVPVRTSGKCGALLSDTVDGMLWAGGISVSGVPANPN HHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHCCEEEECCEEECCCCCCCC PARVINVSLGSVGSCSAAEQDAINRLAALGTVVVAAAGNEGSAVDAPANCSGAIAVTAHV CCEEEEEECCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEE DSGENASYANVGSQVALSAPGGGCANSQATSSGCTGPVSVIQADSNDGQYSLGNSVVKSV CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHH AGTSFSTPEVAGTIALMLSVQSQLSNAQILAGLQQTARAHPSGTFCATRGGCGAGLLDTA CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHC GAVRYAQTTTPAGIGSGSSSSSSSGSSSSSSGGGGGGGAIEMAGAALLLAAGLACRRRRT CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC TAR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2187155; 12024217 [H]