Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is recN [H]
Identifier: 17547370
GI number: 17547370
Start: 2852708
End: 2854417
Strand: Direct
Name: recN [H]
Synonym: RSc2651
Alternate gene names: 17547370
Gene position: 2852708-2854417 (Clockwise)
Preceding gene: 17547369
Following gene: 17547371
Centisome position: 76.76
GC content: 72.92
Gene sequence:
>1710_bases ATGCTGCACAGCCTGACCATCCGCGATTTCGTCATCGTCCATGCCCTGGACCTCGACCTGGCCGACGGCTTCACCGTGTT CACGGGCGAGACCGGCGCCGGCAAGTCCATCCTGATCGACGCGCTGGCGCTGACGCTCGGCGAGCGCGCCGATGCCACCG TGGTGCGCGAGGGCGCGCCGCGCGCCGACATCACCGCCGCGTTCGACACCCACCCGCAGGTGCTCGCCTGGCTGGAAGCG CACGAGCTGCACGGCGACGACGGCACCATCCTGCTGCGCCGCACGGTCGATGCCGCCGGCCGCAGCAAGGCCTTCATCAA CGGCGCGGCCGTCACGCTGGCGCAGTTGCGCGAGGTCGGCGAACAGCTGGTCGACATCCACGGCCAGCATGCGCACCAGC TGCTGCTCAAGACCGATGCCCAGCGCCGCCTGCTCGATGCCCATGCGGGGCTGGAAGACGAGGTGCGCGCGGTCGGCGAG CGGTATCGCGCATGGCAGGCGGTGGTCCGCCTGCGCGAGGCGGCCGAGCAGCAGTCGCGCGAAGCGCAGCTCGAGCGCGA GCGCGTGGAATGGCAGGTCAGCGAATTGCAGAAGCTCGCCCCGCAGCCGGGCGAGTGGGAAGAAGTCCAGGCCGAGCATC ACCGCCTGTCGCACGCGGCCAGCCTGATCGAGGGCACGCGCGCGGCGCTGGATACGCTGTCCGAAGCGGACAGCGCCGTG CTCACGCAGCTCGGTGCGGCGGTGCACGGCCTGCAGGCCCTGGCCGAGATCGACCCGGCACTGGCCGACGTGCTGGCCGC GCTGGAGCCCGCGCAGGTGCAAGTCCAGGAAGCCGTGCATTCGCTCGCCCGCTACGCCGACCGCGCCGAACTGGATCCGG ACCGGCTGGCCGAGGTCGACGCACGCCTGCAGGCGCTGCACACCATGGCGCGCAAATACCGCGTCGCCCCCGAGACCCTG CCTGCCGAGCTGACGCAGCGGCAGGCGCAGCTGGCCGCATTGCAGGCCGCCTCCGACCTGGACGCGCTGCAGGCGCAAGA GGCGCAAACCCATGCGGCCTATCTGCAAGCCGCGCAGGCGCTGTCGCGCGGGCGAGCCAAAGCCGCGCGCGAACTGGCCG ACGCCGTGACCGGCGCCATGCAGGGGCTGTCGATGGCGGGCGGGCGGTTCGAGATCGCGCTGCATCCGCTGGAACCGGGC GGCGCGGCCGGGCTGGAGCAGGTGGAGTTCCTGGTCGCCGGACATGCGGGCGTGTCGCCGCGTCCGCTGGCCAAGGTGGC CTCGGGCGGCGAACTCGCCCGGATCAGCCTAGCGATCTCGGTGATCGCCAGCGAGGCCAGCCCGACCCCGACGCTGATCT TCGACGAGGTCGACTCCGGCATCGGCGGCGCCGTGGCCGAGGTGGTCGGCCGGCGGCTGCGCGAACTGGGCACACGCCGC CAGGTGCTGTGCGTGACCCACCTGCCGCAGGTGGCGGCGCTGGCCAACCACCACGTGCAGGTCGCCAAGCAGACCGTGGA CGGCAGCACGCGCTCCGACCTGGTGGTGCTCGATGCCACCGGCCGCGTCGACGAGATCGCCCGCATGCTGGGCGGCGCAT CGCTGACCGACACCACGCGCCGCCACGCCGACGAAATGCTCGCCGCGGGCCGGGCGCATCCGGCGCCCGCGCCGGCCGGG CAGCGGAAATCCCGGCGCGCGGTCCAGTGA
Upstream 100 bases:
>100_bases ACAACTACTACGCCACGCTGCGCAAGAAGCTGCACTGGCACGAGTACCCGACCGAAGACAACCGGCTGTAACGCCAACAA CCGATATCGCTCGACGCTCC
Downstream 100 bases:
>100_bases TTGCCTATACCGACAACATCGCCGCCCGCATCACGGTGCCGTCTTCCGGCGAACCGACGTTCCAACCCCAAGGAGAATTC CATGGCCCGACCGGCTGCCC
Product: DNA repair protein
Products: NA
Alternate protein names: Recombination protein N [H]
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MLHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADATVVREGAPRADITAAFDTHPQVLAWLEA HELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQLREVGEQLVDIHGQHAHQLLLKTDAQRRLLDAHAGLEDEVRAVGE RYRAWQAVVRLREAAEQQSREAQLERERVEWQVSELQKLAPQPGEWEEVQAEHHRLSHAASLIEGTRAALDTLSEADSAV LTQLGAAVHGLQALAEIDPALADVLAALEPAQVQVQEAVHSLARYADRAELDPDRLAEVDARLQALHTMARKYRVAPETL PAELTQRQAQLAALQAASDLDALQAQEAQTHAAYLQAAQALSRGRAKAARELADAVTGAMQGLSMAGGRFEIALHPLEPG GAAGLEQVEFLVAGHAGVSPRPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGTRR QVLCVTHLPQVAALANHHVQVAKQTVDGSTRSDLVVLDATGRVDEIARMLGGASLTDTTRRHADEMLAAGRAHPAPAPAG QRKSRRAVQ
Sequences:
>Translated_569_residues MLHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADATVVREGAPRADITAAFDTHPQVLAWLEA HELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQLREVGEQLVDIHGQHAHQLLLKTDAQRRLLDAHAGLEDEVRAVGE RYRAWQAVVRLREAAEQQSREAQLERERVEWQVSELQKLAPQPGEWEEVQAEHHRLSHAASLIEGTRAALDTLSEADSAV LTQLGAAVHGLQALAEIDPALADVLAALEPAQVQVQEAVHSLARYADRAELDPDRLAEVDARLQALHTMARKYRVAPETL PAELTQRQAQLAALQAASDLDALQAQEAQTHAAYLQAAQALSRGRAKAARELADAVTGAMQGLSMAGGRFEIALHPLEPG GAAGLEQVEFLVAGHAGVSPRPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGTRR QVLCVTHLPQVAALANHHVQVAKQTVDGSTRSDLVVLDATGRVDEIARMLGGASLTDTTRRHADEMLAAGRAHPAPAPAG QRKSRRAVQ >Mature_569_residues MLHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADATVVREGAPRADITAAFDTHPQVLAWLEA HELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQLREVGEQLVDIHGQHAHQLLLKTDAQRRLLDAHAGLEDEVRAVGE RYRAWQAVVRLREAAEQQSREAQLERERVEWQVSELQKLAPQPGEWEEVQAEHHRLSHAASLIEGTRAALDTLSEADSAV LTQLGAAVHGLQALAEIDPALADVLAALEPAQVQVQEAVHSLARYADRAELDPDRLAEVDARLQALHTMARKYRVAPETL PAELTQRQAQLAALQAASDLDALQAQEAQTHAAYLQAAQALSRGRAKAARELADAVTGAMQGLSMAGGRFEIALHPLEPG GAAGLEQVEFLVAGHAGVSPRPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGTRR QVLCVTHLPQVAALANHHVQVAKQTVDGSTRSDLVVLDATGRVDEIARMLGGASLTDTTRRHADEMLAAGRAHPAPAPAG QRKSRRAVQ
Specific function: May be involved in recombinational repair of damaged DNA [H]
COG id: COG0497
COG function: function code L; ATPase involved in DNA repair
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recN family [H]
Homologues:
Organism=Escherichia coli, GI48994901, Length=557, Percent_Identity=43.9856373429084, Blast_Score=409, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004604 - InterPro: IPR003395 [H]
Pfam domain/function: PF02463 SMC_N [H]
EC number: NA
Molecular weight: Translated: 60685; Mature: 60685
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADATVVREGAP CCCCCCHHHHHHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHEECCCC RADITAAFDTHPQVLAWLEAHELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQLREVG CCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH EQLVDIHGQHAHQLLLKTDAQRRLLDAHAGLEDEVRAVGERYRAWQAVVRLREAAEQQSR HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQLERERVEWQVSELQKLAPQPGEWEEVQAEHHRLSHAASLIEGTRAALDTLSEADSAV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQLGAAVHGLQALAEIDPALADVLAALEPAQVQVQEAVHSLARYADRAELDPDRLAEVD HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ARLQALHTMARKYRVAPETLPAELTQRQAQLAALQAASDLDALQAQEAQTHAAYLQAAQA HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRGRAKAARELADAVTGAMQGLSMAGGRFEIALHPLEPGGAAGLEQVEFLVAGHAGVSP HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCC RPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGTRR CHHHHHCCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC QVLCVTHLPQVAALANHHVQVAKQTVDGSTRSDLVVLDATGRVDEIARMLGGASLTDTTR EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCHHHH RHADEMLAAGRAHPAPAPAGQRKSRRAVQ HHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDALALTLGERADATVVREGAP CCCCCCHHHHHHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHEECCCC RADITAAFDTHPQVLAWLEAHELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQLREVG CCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH EQLVDIHGQHAHQLLLKTDAQRRLLDAHAGLEDEVRAVGERYRAWQAVVRLREAAEQQSR HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQLERERVEWQVSELQKLAPQPGEWEEVQAEHHRLSHAASLIEGTRAALDTLSEADSAV HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQLGAAVHGLQALAEIDPALADVLAALEPAQVQVQEAVHSLARYADRAELDPDRLAEVD HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ARLQALHTMARKYRVAPETLPAELTQRQAQLAALQAASDLDALQAQEAQTHAAYLQAAQA HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRGRAKAARELADAVTGAMQGLSMAGGRFEIALHPLEPGGAAGLEQVEFLVAGHAGVSP HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCC RPLAKVASGGELARISLAISVIASEASPTPTLIFDEVDSGIGGAVAEVVGRRLRELGTRR CHHHHHCCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC QVLCVTHLPQVAALANHHVQVAKQTVDGSTRSDLVVLDATGRVDEIARMLGGASLTDTTR EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCHHHH RHADEMLAAGRAHPAPAPAGQRKSRRAVQ HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3037486; 9205837; 9278503 [H]