Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17547338
Identifier: 17547338
GI number: 17547338
Start: 2820359
End: 2822662
Strand: Direct
Name: 17547338
Synonym: RSc2619
Alternate gene names: NA
Gene position: 2820359-2822662 (Clockwise)
Preceding gene: 17547331
Following gene: 17547343
Centisome position: 75.89
GC content: 46.96
Gene sequence:
>2304_bases ATGATCGTCTGCATTAACCGCCTCAAGCAGTTCGGCATCTTCAACGACTTTAATGGAACGAAGATCCAGAAGTTCGGCCG GTACAACTTGGTCTATGGCTGGAACGGAACAGGCAAGTCAACCCTGTCGAACCTTTTCTCTTGCTTTGAGCTGCGCTCGA TGGTTCCTCGCTTCAGTGCGGGCCAGTTTTCAGTAGCTTTGGAGGATGGCTCAACTATCACGGAAGCTACACTCCATTCA TGCCAACTGAATATTCATGTCTTCAATCAACGCTTTGTGCATGAGAACATTGATTGGGACAAATCTGTAAAAAGCATCCT TCTGATTGCGAAAGAGAAAATTGATGACTTACAGAAGCTGGAGAAGTTAAAGGGAGAGCTTCAGTCGAAAAGGAAGGCTC GCGACGAGAAGCAAGGCGAGGTAAAGAAGCAGCGCGAAGCGTTGGACAAGTTTCTGACCAATGCTGCCAAAAAGATGAAG CTAGGGCTTCAGGCGATTGATACAAGCGATAGCTATTACCTCAATTACGATCGCCGAAAGCTGTCCAATTTCATTCAGAG CAACGGTGAAGCCATCATCAAAGCCGATTCAATTCTTTCAGATGATAAAGTTATCGACCTTACGAATGCCGCGAAACCAG ATCAGCTTCCAAGCATCAATTTCGTCTCAACATCCATTGAGCCGGATTACTTCAAGAAGGCATCAGGTCGAATCAGGGAT TTGATTGGGACTACGGCGGTCAATCAAGCTATCCAGCGGTTGACTGACAACCCGGACATCCGTGAATGGGTTCAAACAGG CTTGGAAATCCATAAAAACCACGAGTCGCAATCGTGCGAGTTCTGCGGCTCTACTTTTACCCAGCTTCGTGCCGAGGCAC TTGCTGCCCACTTCAGCAAAGAGTTCACGGATTTTCAGCGCCGACTTCAGAACGCGGCGACTTGGATTGAGTCTCAAGGC GCTCCAGCCAATCAGTTGCCCGCAGCGACCGAGTTTTATAAAGAATTATCGGCCGAGGCGGATAAGCTCCAAAAGGACTA CGCAACCGCTGCTGAGAAGATTGATAAGCAAATGGACGGATGGCGCGAAGCCCTGAAGGCCAAGATCACAGACCCTGGAA AGACGGACATTCAAATCTCGGACGTGGTCGAAGATGACGTCAAAAACTTCAATGAGATTCTGAAGTCGATCGTCGCGCTC GTCGGAAAGCACAACAATAAGACTTCTAACTTCAAATCTGAGACCTCAAAAAGCAAAGTGGCACTGGAGCTGCACTTTGC TGCGGCTGAGGTGCAAGAATTTGACTATGCTGGAAGTGAGAAGAAATGCAATGACCTTGAATCAGAAGCAAAAAACGACC ACAAGGAAATTGAAAAAATTAGTCAAGAGGTCGGTGCTATAGAGGCGCTGCTCTCGAATGAAACGGTCGGAGCGAAGGAG TTCAATGACATCTTGCATCGCTTCATTGGCCGCTCTGAACTTTGTCTCAGCTTCAATCAGAAGAAGAAGGGTTATGAGAT CATCAGAAACGGGATGGGTGAGCATGATGGGAACTTGAGCGAAGGTGAGAAGACTGCGATTGCATTTGTGTACTTCATCA CGAAGCTCAAAGAGAACGGAAACAACATCAAAGACACGATTGTCGTCGTTGATGATCCAGTCTCAAGCTTTGATTCAAAC CACTTGTTCCATGCCTATTCATTCCTGAGAACTCAATGTACTGAAGCCAAACAACTTTTTGTGCTGACCCACAATTTCAC CTACTTCAAGCTAGTGAGAGATTGGTTCACTGGAGCGAACAGAAACAGGATCAACAAGGGAAAAACGGAGAACTGCTTCT TCTATCGGCTGGATGCTCCGCCTGGCTCACCCCGCCATTCATTGCTTGTTGACGCTGATGACTCTCTGAAAAATTACGGT TCTGAGTATCACTACATATTCAAAAAACTTTATGAGTACAGAGCCCATACGACTCTTAACAGAGATGAAGCATTCTTGAC TGCGAACCTTGCTCGCAAGCTCGTTGAGTCGTTCTTTACCTTCAAATATCCAAAGCGGAGAAGCGACATCAGTCAGTTGA TGGATGTTGGTCTGAAAGACTGCATCATCACAACACCGGAGCTGAAGGAGAAGATCTATCGTTTTATCAACAAGTATTCG CATAGCGACGTAATCGAGATAACCGAGGAGTCCGCAGAAAACTTGGCAGGCGAAAGTCATAGCGTCATCGGGCACATTTT TCAGTGGTTGGAGGAAGTGGACAAGAAGCACTACGACGAGATGATTCAGGTTGCGACTGCCTGA
Upstream 100 bases:
>100_bases GGAACAGCGCGGTCCGCGAAGCGGAGACGCAGAAGAACTCTTCGCTTATTATTTGTTTTGCAAGCAAATGTTGCCAAAGC AAGAACACGGAGGTCCAAAA
Downstream 100 bases:
>100_bases GCATCAAGCCGGCGAGGGCGAGAGTTGTGCTACCAGGCGCAGCAAAAAGGGGCCGAAGCCCCTTCGTCAGATCAGGCCAC GTTCGGCAAACGATGTGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MIVCINRLKQFGIFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSMVPRFSAGQFSVALEDGSTITEATLHS CQLNIHVFNQRFVHENIDWDKSVKSILLIAKEKIDDLQKLEKLKGELQSKRKARDEKQGEVKKQREALDKFLTNAAKKMK LGLQAIDTSDSYYLNYDRRKLSNFIQSNGEAIIKADSILSDDKVIDLTNAAKPDQLPSINFVSTSIEPDYFKKASGRIRD LIGTTAVNQAIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLRAEALAAHFSKEFTDFQRRLQNAATWIESQG APANQLPAATEFYKELSAEADKLQKDYATAAEKIDKQMDGWREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVAL VGKHNNKTSNFKSETSKSKVALELHFAAAEVQEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKE FNDILHRFIGRSELCLSFNQKKKGYEIIRNGMGEHDGNLSEGEKTAIAFVYFITKLKENGNNIKDTIVVVDDPVSSFDSN HLFHAYSFLRTQCTEAKQLFVLTHNFTYFKLVRDWFTGANRNRINKGKTENCFFYRLDAPPGSPRHSLLVDADDSLKNYG SEYHYIFKKLYEYRAHTTLNRDEAFLTANLARKLVESFFTFKYPKRRSDISQLMDVGLKDCIITTPELKEKIYRFINKYS HSDVIEITEESAENLAGESHSVIGHIFQWLEEVDKKHYDEMIQVATA
Sequences:
>Translated_767_residues MIVCINRLKQFGIFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSMVPRFSAGQFSVALEDGSTITEATLHS CQLNIHVFNQRFVHENIDWDKSVKSILLIAKEKIDDLQKLEKLKGELQSKRKARDEKQGEVKKQREALDKFLTNAAKKMK LGLQAIDTSDSYYLNYDRRKLSNFIQSNGEAIIKADSILSDDKVIDLTNAAKPDQLPSINFVSTSIEPDYFKKASGRIRD LIGTTAVNQAIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLRAEALAAHFSKEFTDFQRRLQNAATWIESQG APANQLPAATEFYKELSAEADKLQKDYATAAEKIDKQMDGWREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVAL VGKHNNKTSNFKSETSKSKVALELHFAAAEVQEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKE FNDILHRFIGRSELCLSFNQKKKGYEIIRNGMGEHDGNLSEGEKTAIAFVYFITKLKENGNNIKDTIVVVDDPVSSFDSN HLFHAYSFLRTQCTEAKQLFVLTHNFTYFKLVRDWFTGANRNRINKGKTENCFFYRLDAPPGSPRHSLLVDADDSLKNYG SEYHYIFKKLYEYRAHTTLNRDEAFLTANLARKLVESFFTFKYPKRRSDISQLMDVGLKDCIITTPELKEKIYRFINKYS HSDVIEITEESAENLAGESHSVIGHIFQWLEEVDKKHYDEMIQVATA >Mature_767_residues MIVCINRLKQFGIFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSMVPRFSAGQFSVALEDGSTITEATLHS CQLNIHVFNQRFVHENIDWDKSVKSILLIAKEKIDDLQKLEKLKGELQSKRKARDEKQGEVKKQREALDKFLTNAAKKMK LGLQAIDTSDSYYLNYDRRKLSNFIQSNGEAIIKADSILSDDKVIDLTNAAKPDQLPSINFVSTSIEPDYFKKASGRIRD LIGTTAVNQAIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLRAEALAAHFSKEFTDFQRRLQNAATWIESQG APANQLPAATEFYKELSAEADKLQKDYATAAEKIDKQMDGWREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVAL VGKHNNKTSNFKSETSKSKVALELHFAAAEVQEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKE FNDILHRFIGRSELCLSFNQKKKGYEIIRNGMGEHDGNLSEGEKTAIAFVYFITKLKENGNNIKDTIVVVDDPVSSFDSN HLFHAYSFLRTQCTEAKQLFVLTHNFTYFKLVRDWFTGANRNRINKGKTENCFFYRLDAPPGSPRHSLLVDADDSLKNYG SEYHYIFKKLYEYRAHTTLNRDEAFLTANLARKLVESFFTFKYPKRRSDISQLMDVGLKDCIITTPELKEKIYRFINKYS HSDVIEITEESAENLAGESHSVIGHIFQWLEEVDKKHYDEMIQVATA
Specific function: Unknown
COG id: COG4694
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87430; Mature: 87430
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVCINRLKQFGIFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSMVPRFSA CEEEHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC GQFSVALEDGSTITEATLHSCQLNIHVFNQRFVHENIDWDKSVKSILLIAKEKIDDLQKL CCEEEEECCCCHHHHHHHHHHEEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EKLKGELQSKRKARDEKQGEVKKQREALDKFLTNAAKKMKLGLQAIDTSDSYYLNYDRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECHHHH LSNFIQSNGEAIIKADSILSDDKVIDLTNAAKPDQLPSINFVSTSIEPDYFKKASGRIRD HHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHH LIGTTAVNQAIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLRAEALAAHFSK HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH EFTDFQRRLQNAATWIESQGAPANQLPAATEFYKELSAEADKLQKDYATAAEKIDKQMDG HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVALVGKHNNKTSNFKSETSKSKV HHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEE ALELHFAAAEVQEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKE EEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FNDILHRFIGRSELCLSFNQKKKGYEIIRNGMGEHDGNLSEGEKTAIAFVYFITKLKENG HHHHHHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC NNIKDTIVVVDDPVSSFDSNHLFHAYSFLRTQCTEAKQLFVLTHNFTYFKLVRDWFTGAN CCCEEEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC RNRINKGKTENCFFYRLDAPPGSPRHSLLVDADDSLKNYGSEYHYIFKKLYEYRAHTTLN CCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCC RDEAFLTANLARKLVESFFTFKYPKRRSDISQLMDVGLKDCIITTPELKEKIYRFINKYS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHEECCHHHHHHHHHHHHHCC HSDVIEITEESAENLAGESHSVIGHIFQWLEEVDKKHYDEMIQVATA CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIVCINRLKQFGIFNDFNGTKIQKFGRYNLVYGWNGTGKSTLSNLFSCFELRSMVPRFSA CEEEHHHHHHCCCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC GQFSVALEDGSTITEATLHSCQLNIHVFNQRFVHENIDWDKSVKSILLIAKEKIDDLQKL CCEEEEECCCCHHHHHHHHHHEEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EKLKGELQSKRKARDEKQGEVKKQREALDKFLTNAAKKMKLGLQAIDTSDSYYLNYDRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECHHHH LSNFIQSNGEAIIKADSILSDDKVIDLTNAAKPDQLPSINFVSTSIEPDYFKKASGRIRD HHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHH LIGTTAVNQAIQRLTDNPDIREWVQTGLEIHKNHESQSCEFCGSTFTQLRAEALAAHFSK HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH EFTDFQRRLQNAATWIESQGAPANQLPAATEFYKELSAEADKLQKDYATAAEKIDKQMDG HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WREALKAKITDPGKTDIQISDVVEDDVKNFNEILKSIVALVGKHNNKTSNFKSETSKSKV HHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEE ALELHFAAAEVQEFDYAGSEKKCNDLESEAKNDHKEIEKISQEVGAIEALLSNETVGAKE EEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH FNDILHRFIGRSELCLSFNQKKKGYEIIRNGMGEHDGNLSEGEKTAIAFVYFITKLKENG HHHHHHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC NNIKDTIVVVDDPVSSFDSNHLFHAYSFLRTQCTEAKQLFVLTHNFTYFKLVRDWFTGAN CCCEEEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC RNRINKGKTENCFFYRLDAPPGSPRHSLLVDADDSLKNYGSEYHYIFKKLYEYRAHTTLN CCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCC RDEAFLTANLARKLVESFFTFKYPKRRSDISQLMDVGLKDCIITTPELKEKIYRFINKYS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHEECCHHHHHHHHHHHHHCC HSDVIEITEESAENLAGESHSVIGHIFQWLEEVDKKHYDEMIQVATA CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA