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The map label for this gene is perM [C]

Identifier: 17547343

GI number: 17547343

Start: 2827245

End: 2828315

Strand: Direct

Name: perM [C]

Synonym: RSc2624

Alternate gene names: 17547343

Gene position: 2827245-2828315 (Clockwise)

Preceding gene: 17547338

Following gene: 17547344

Centisome position: 76.07

GC content: 66.76

Gene sequence:

>1071_bases
ATGAACGCCCCGTTGCTGACGCAGGACACCAAGCGCACGCTCGCGTGGATCGCCGTGGCCGTCGCCTTCCTGGCCCTGCT
CAAACTGCTGGCGCCGACGCTCACGCCGTTCGTGTTCGCGGGCATCCTATCGTACATCCTGCATCCCGGCGTGGAATGGC
TGCAACGGCACCGCGTGCCGCGCGTGCTGGGCGTGTTCCTGATGATCCTGCTGCTGACAGTGGTGGCCGTGGCGCTGATG
CTGCTGATCCTGGCGGTGCTGCAGCGGGAGATTCCCGCCATCCGCGAACAGCTGCCCGGCATGCTGTCCAAGCTGAACGC
GGCGGTCACGCCCCGGCTGGCGGAGATGGGCGTGCACGTGCGCTTCGACTTCCCCGGCCTGCGCAAGCTGCTCACCGAAC
AGCTCGCCGCCAGCCCGGAGGACGTGATGTCCACGGCGCTGAACTACCTGCGCGTGTCGGGCTCGGCCGCGGTGCAAGTG
CTCGGCATCGTCTTCCTGGTGCCGATCGTGATGTTCTACCTGCTGATGGACTGGAACATGCTGATACGCCGGCTGGAAGG
CGCCGTGCCGCGCCGCTGGATCAGCAAGACGCGCGAGCTGGCGGCCGAGACCGACGGCCTGCTGTCGCAATACCTGCGCG
GACAGATCATCGTGATGCTGGTGCTGGCGGCGTATTACTCGGCCGGGTTGGCGCTGGCCGGCTTCGATGTGGCGCTGCCG
ATCGGCATCTTCACCGGGCTGGCGGTGTTCATCCCCTACATCGGCTTCGGCATCGGCCTGATCCTGGCGATCCTGTCGGC
GCTGCTGCAATTCGGCAACCTGTACGGCCTGCTGGCGGTGGCGGTGGTCTACGGCGTCGGCCAGGTGCTGGAAGGTTTCT
ACCTGACGCCGCGGCTGGTGGGCGAGCGCATCGGGCTGCACCCGCTGGCGGTCATCCTCGCCCTGCTGGCTTTTGGCCAA
TTGTTCGGATTTTTCGGTATCCTGCTGGCCCTGCCGATCAGCGCCGTGCTGCTGGTCGGCCTGCGGCAGATCCGGCAGCT
CTACCTGGGCAGCAAGCTGTACCGCGACTAA

Upstream 100 bases:

>100_bases
TCAGGACCCGCCGGTCCAGTAAAATCGCGATTTTACCGGATGCCGCCCCCATTGGCTGCTTTCCGGTCCTCTTCGACCCG
CCATAGGACTCCGACCGCCC

Downstream 100 bases:

>100_bases
TCCGACCATCGACCCACGTTTCATGGCCCTTCCGCAACAGCTACCGCTCGAGTTCGGCGCGACACCCGCCCCGACCATCG
GCAACTTCGTCGCCACCGGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNAPLLTQDTKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRVPRVLGVFLMILLLTVVAVALM
LLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHVRFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQV
LGIVFLVPIVMFYLLMDWNMLIRRLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALP
IGIFTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQ
LFGFFGILLALPISAVLLVGLRQIRQLYLGSKLYRD

Sequences:

>Translated_356_residues
MNAPLLTQDTKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRVPRVLGVFLMILLLTVVAVALM
LLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHVRFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQV
LGIVFLVPIVMFYLLMDWNMLIRRLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALP
IGIFTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQ
LFGFFGILLALPISAVLLVGLRQIRQLYLGSKLYRD
>Mature_356_residues
MNAPLLTQDTKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRVPRVLGVFLMILLLTVVAVALM
LLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHVRFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQV
LGIVFLVPIVMFYLLMDWNMLIRRLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALP
IGIFTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQ
LFGFFGILLALPISAVLLVGLRQIRQLYLGSKLYRD

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=346, Percent_Identity=30.0578034682081, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787885, Length=353, Percent_Identity=26.3456090651558, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 38909; Mature: 38909

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPLLTQDTKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRVP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCH
RVLGVFLMILLLTVVAVALMLLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEE
RFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNM
EECCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRRLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IGIFTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GERIGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQIRQLYLGSKLYRD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAPLLTQDTKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRVP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCH
RVLGVFLMILLLTVVAVALMLLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMGVHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEE
RFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNM
EECCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRRLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
IGIFTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GERIGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQIRQLYLGSKLYRD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]