Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17547330
Identifier: 17547330
GI number: 17547330
Start: 2812522
End: 2813085
Strand: Direct
Name: 17547330
Synonym: RSc2611
Alternate gene names: NA
Gene position: 2812522-2813085 (Clockwise)
Preceding gene: 17547329
Following gene: 17547331
Centisome position: 75.68
GC content: 50.0
Gene sequence:
>564_bases ATGGCATATCGAAATGGAAACTACACCGCCTTTTACGTTGCAGAGCCATTCCATCCCAGCTCGCTAGGTGCCAATGCGAC GAAGGATTTTCAGTATTACAACACCCTACGGATGTGGAAAGGTGCTGATGCGACGTTCCCCTTCGTTGATTCGCACGACA AAACTTACAGTGTCCGCGATGGCAGCGATTGGGAATACACACTGAAACCCAGGCTCAGGGAGCGCCTTCGGAGCTCGAAG AACATTATCCTCATCTTGAGTTCGATCACGACGAATTCCCGCGCCCTTCGAGAAGAAATCGACTACGGGATCAACGATCA AGGGCTTCCTGTCATTGTCATCTATCCCGAATATGCCACCAAGGAAAGTCTGCTTGTCGACGGATCATTGAAGCAGGCGG TTAAGAACCTGTGGGGAAATCTTCCCGTGTTCCGGGATTCGATGAGCAAAATCCCGACGCTTCATGTCCCGATGAATAAA GAGCTCATCAAAAAATCCTTGCAGGACGGCGAGTTTATGGTTGGGAGCATGAAGGCCCCAGACATCTACAGATACAACCC ATAA
Upstream 100 bases:
>100_bases CCTTTGCGGGCGACAGCACGCGCAAGGCTGACGAGTTGTTGGCGCAGGTGCGCCAGGAACTTGAGGCGGTACTGAACTCT GATGGAGATTGAGAAGCGAC
Downstream 100 bases:
>100_bases TCAATCGACATATATGAGCGAATGATTCACGTCATGGCGAAGGTCAACTTTTTTGACAAGCGGGTCATCAAGAAATTCCT TGAGATCACCGCTGTCGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MAYRNGNYTAFYVAEPFHPSSLGANATKDFQYYNTLRMWKGADATFPFVDSHDKTYSVRDGSDWEYTLKPRLRERLRSSK NIILILSSITTNSRALREEIDYGINDQGLPVIVIYPEYATKESLLVDGSLKQAVKNLWGNLPVFRDSMSKIPTLHVPMNK ELIKKSLQDGEFMVGSMKAPDIYRYNP
Sequences:
>Translated_187_residues MAYRNGNYTAFYVAEPFHPSSLGANATKDFQYYNTLRMWKGADATFPFVDSHDKTYSVRDGSDWEYTLKPRLRERLRSSK NIILILSSITTNSRALREEIDYGINDQGLPVIVIYPEYATKESLLVDGSLKQAVKNLWGNLPVFRDSMSKIPTLHVPMNK ELIKKSLQDGEFMVGSMKAPDIYRYNP >Mature_186_residues AYRNGNYTAFYVAEPFHPSSLGANATKDFQYYNTLRMWKGADATFPFVDSHDKTYSVRDGSDWEYTLKPRLRERLRSSKN IILILSSITTNSRALREEIDYGINDQGLPVIVIYPEYATKESLLVDGSLKQAVKNLWGNLPVFRDSMSKIPTLHVPMNKE LIKKSLQDGEFMVGSMKAPDIYRYNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21444; Mature: 21312
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYRNGNYTAFYVAEPFHPSSLGANATKDFQYYNTLRMWKGADATFPFVDSHDKTYSVRD CCEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCEECCCCCEEEECC GSDWEYTLKPRLRERLRSSKNIILILSSITTNSRALREEIDYGINDQGLPVIVIYPEYAT CCCCEEEECHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCC KESLLVDGSLKQAVKNLWGNLPVFRDSMSKIPTLHVPMNKELIKKSLQDGEFMVGSMKAP CCEEEECCHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCHHHHHHHCCCCCEEEECCCCC DIYRYNP CEEEECC >Mature Secondary Structure AYRNGNYTAFYVAEPFHPSSLGANATKDFQYYNTLRMWKGADATFPFVDSHDKTYSVRD CEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCEECCCCCEEEECC GSDWEYTLKPRLRERLRSSKNIILILSSITTNSRALREEIDYGINDQGLPVIVIYPEYAT CCCCEEEECHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCC KESLLVDGSLKQAVKNLWGNLPVFRDSMSKIPTLHVPMNKELIKKSLQDGEFMVGSMKAP CCEEEECCHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCHHHHHHHCCCCCEEEECCCCC DIYRYNP CEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA