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The map label for this gene is yafC [C]

Identifier: 17547319

GI number: 17547319

Start: 2804006

End: 2804443

Strand: Direct

Name: yafC [C]

Synonym: RSc2600

Alternate gene names: 17547319

Gene position: 2804006-2804443 (Clockwise)

Preceding gene: 17547317

Following gene: 17547329

Centisome position: 75.45

GC content: 67.35

Gene sequence:

>438_bases
GTGTCGGTACAGACACAACGGGCGAGGCCGCCGCGGCAAGCGCACGGCACGCCTGCCCGGCCGGCCGATCTTGCACAACA
CGCCTGCCTGGGGTTCTCCAGCCTGGCCTCGCATCCCCTTTGGCACCTTCGCGACGGTGACAAGGCAACGGCGATTCGGA
TAGCAGGCCCGCTGGTCACGGACGATGCGCAAAGCCTCGTCCAAGCGGCCGTTTCCGGTGCCGGCATCGCAATGGTGTCC
GACTGGCTGGCCGGCCCGGAACTGTGCAGCGGCCGGCTGGTGCCCGTACTGCCTGACCATCCCGTGGAGAACAACGAGAC
GGTCTACCTGGTGCATCCATCCGCGCGATTGGTGCCAGCCAACACGCGGGCGTTCGCAGACTGGATCGTGGGGGAGCTTG
GGACAAGGCCGTTGCTGAGCCAGGCGTCAGCCGACTGA

Upstream 100 bases:

>100_bases
CGGTCGAGCAGGCCCTCGACACGTGCCAGGGCCCGGGCCGTGTCGTTCACCGGTTCGGGGGAGAGCAGCGACCAGCGACC
GGCGAGGGTCGGATCACCAA

Downstream 100 bases:

>100_bases
CGGCCCTCTGGCGCGCCCTACCTCCCACGACACCCCGCCGCCGCGCACCGTCGCGGCGATCTGCTGCCCCAGCCGTTGTT
CGATCACCGGACGCCACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; LysR-Family Transcriptional Regulator; Transcription Regulator Protein; LysR Family Regulatory Protein; Transcriptional Regulator LysR Family Protein; Carbonate Dehydratase; Transcriptional Regulator Protein; Transcriptional Regulator Protein LysR Family; Lysr Family Transcriptional Regulator; Transcriptional Regulatory Protein LysR Family; Transcription Regulator LysR Family; LysR Family Regulatory Helix-Turn-Helix Protein; LysR Family Transcription Regulator Protein; HTH-Type Transcriptional Activator TtdR; Lys Family Transcriptional Regulatory Protein; Regulatory Protein LysR

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSVQTQRARPPRQAHGTPARPADLAQHACLGFSSLASHPLWHLRDGDKATAIRIAGPLVTDDAQSLVQAAVSGAGIAMVS
DWLAGPELCSGRLVPVLPDHPVENNETVYLVHPSARLVPANTRAFADWIVGELGTRPLLSQASAD

Sequences:

>Translated_145_residues
MSVQTQRARPPRQAHGTPARPADLAQHACLGFSSLASHPLWHLRDGDKATAIRIAGPLVTDDAQSLVQAAVSGAGIAMVS
DWLAGPELCSGRLVPVLPDHPVENNETVYLVHPSARLVPANTRAFADWIVGELGTRPLLSQASAD
>Mature_144_residues
SVQTQRARPPRQAHGTPARPADLAQHACLGFSSLASHPLWHLRDGDKATAIRIAGPLVTDDAQSLVQAAVSGAGIAMVSD
WLAGPELCSGRLVPVLPDHPVENNETVYLVHPSARLVPANTRAFADWIVGELGTRPLLSQASAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15322; Mature: 15191

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQTQRARPPRQAHGTPARPADLAQHACLGFSSLASHPLWHLRDGDKATAIRIAGPLVT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCEEEECCCCCEEEEEEECCCCC
DDAQSLVQAAVSGAGIAMVSDWLAGPELCSGRLVPVLPDHPVENNETVYLVHPSARLVPA
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCEEEEECCCCEEEEC
NTRAFADWIVGELGTRPLLSQASAD
CCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SVQTQRARPPRQAHGTPARPADLAQHACLGFSSLASHPLWHLRDGDKATAIRIAGPLVT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCEEEECCCCCEEEEEEECCCCC
DDAQSLVQAAVSGAGIAMVSDWLAGPELCSGRLVPVLPDHPVENNETVYLVHPSARLVPA
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCEEECCCCCCCCCCCEEEEECCCCEEEEC
NTRAFADWIVGELGTRPLLSQASAD
CCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA